Gene detail

Detail information of GWHGAAEX009541/evm.TU.scaffold_25.147

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158337009\|ref\|YP_001518184.1\|	2.00E-102	acetyl-CoA carboxylase subunit beta [Acaryochloris marina MBIC11017]
KOG	KOG0540	3.00E-143	3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta
nr	gi\|511943355\|ref\|YP_008081659.1\|	0	acetyl-CoA carboxylase carboxyl transferase beta (chloroplast) [Cymbidium sinense]
Swissprot	tr\|Q3BAN3\|ACCD_PHAAO	6.00E-173	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_01395}
trEMBL	tr\|M9YTR5\|M9YTR5_9ASPA	0	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_01395}
TAIR	ATCH032	3.00E-143	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	4738643	4740071	-

Transcript Sequence
>GWHTAAEX009541 CGATGATAATAAGGATAATAAGCTAAAAGTTTTAATTTATCGTTTTTTGAATAATAGGGTGTATATGAATCAAAATCAGTCCTCGGATTTTTATGTATATGATAATAATATTTGGAATAATCATATTAATAATTGTATTGAGTGCTACCTTCGTTATGAGATTACTAAGATTTACAAGGGTATAGACTTATATATTTATAAGTTATTTTTTGAGGCAAGTCAAAGTACTTATACTGATAATATAAAAACGGATGATATAAAAGAGGCTGATTCTATAGATATAATAGATATAGAAGATATAAATAATAAATACAAGAAGTTATGGGTTCAATGTGAGAATTGTTATGGATTAAATTATAAAAAATTATTTAAATCAAGAATGAATATTTGTGAACATTGTGGTTTTCATTTGAAAATGAGTAGTTCAGATAGAATTGATCTTCTTATAGATACCGGAACTTGGAATCCAATGGATGAGAATATTCTCTCAGTAAACCCTATAGAATTCTATTCAGAAGAGGAATCCTATAAAGACCGTCTTTCTTTTTATCAAATAAGAACTGGTTTAATAGAAGCTGTTCAAACAGGTATAGGTAATTTAAATAGTATTCCTGTAGCAATGGGGGTGATGGACTTTCAATTTATGGGAGGTAGCATGGGTTCTGTAGTAGGGGAGAAGATTACTCGTTTGATCGAATATGCTACTAAACAATCATTACCTGTAATTATTATATGTGCTTCCGGAGGAGCACGCATGCAAGAAGGTAGTTTGAGTTTAATGCAAATGGCTAAGATCTCTTCTGTTTTATATGATTATCAATTAAATAACAAGTTCTTTTATATATCAATTCTTACATCTCCTACAACCGGAGGAGTTACAGCTAGTTTTGGTATGTTGGGAGATGTTATTATTGTTGAACCTAATGCTTATATTGCTTTTGCAGGCAAAAGGGTAATTGAACAAACATTGAACAAAATTGTACCGGAAGGTTTACAAACGGCTGAAAATTTATTCCATAAAGGATTATTTGACTTAATTGTACCGCGTAATATTTTAAAAGGGGTTATTTTTGAATTATTTAAACTCCAAGGATTCTTACCCTTGAATATTGATTCAAAGGAATAATTATAGGATATATATATAATTAAGAATTAAGCTTGTATTAGCGTTTACTTTTATCTCCTTGTAACCTTGTATAAAGTATATTTTTATTTTATAAATTTTTTACGATATCAAAAGCACGTTTGGCTATTCTGTACTCTGTAGGATTTGAACCTACGACATAAAATATAAATTCTACCAATAAGAGCACCTGTTAATTATATTAGTCTTTTAAGTATTTTATTCTGTAATATTTTACTAATTTTCATAGAATACTAATAAAAAATAAAATAAAAATATTAGTGATTTTACAAGATTTCATATATT

Network for GWHGAAEX009541

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01039.21	Carboxyl_trans	138	304	1.80E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01963	accD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Pyruvate metabolism	map00620
		Propanoate metabolism	map00640
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0006633	Biological Process	fatty acid biosynthetic process
GO:0003989	Molecular Function	acetyl-CoA carboxylase activity
GO:0009317	Cellular Component	acetyl-CoA carboxylase complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	0.000
	SRR5643514	five period of Gastrodia elata	0.040
	SRR5643515	five period of Gastrodia elata	0.000
	SRR5643524	five period of Gastrodia elata	0.000
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.050
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.190
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.03
	Mother_Gastro	Mother tuber of Gastrodia elata	0.00
	Mother_Juven	Mother tuber of Juvenile	0.00