Gene detail

Detail information of GWHGAAEX009550/evm.TU.scaffold_25.159

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|46446872\|ref\|YP_008237.1\|	3-oxoacyl-ACP synthase [Candidatus Protochlamydia amoebophila UWE25]
KOG	KOG1394	3-oxoacyl-(acyl-carrier-protein) synthase (I and II)
nr	gi\|695009195\|ref\|XP_009391220.1\|	PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|P52410\|KASC1_ARATH	3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic (Precursor)
trEMBL	tr\|M0SC57\|M0SC57_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P05890_001}
TAIR	AT5G46290	3-ketoacyl-acyl carrier protein synthase I

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	5226332	5236418	+

Transcript Sequence
>GWHTAAEX009550 CCCCGGCCATTATTTAACACAGCTCGTTCCCAACCTCGTTGTCGCCGCCTCCTTCGTTTATATCGCAAAACTCTTCCCATTAAAACCTCAGCGCTTCGATCCTTCTGGTAACTTTTCCTCCAGAGCGCTTCTACGCCTTTCTTCACGAAATGCAGAGCCTTGGCTCCCAGCCCAGTCTCCAATTCCCGACATCAAAGGGGCTCCATTGCCGGACATCCATCCCTTCGGTTGTTCATCGGAGTTGTAGAGATGTAAGACGGGCTGTGCGGCTGGCGGGGGTGAGGGCTGCTGTGGCTTCTACTACAATGGCGCCTCAGAGGGAGACGGATCCGAAGAAGCGGATTGTGATCACGGGAATGGGGCTCGTCTCGGTGTTCGGCAACGACGTAGATAAGTACTACGATCGTCTCCTTGAAGGTGAAAGTGGGATCGGGCTGATAGATCGATTTGATGCTTCGAAGTTCCCTACAAAATTTGCTGGTCAGATTCGAGATTTCTCGTCGGAAGGGTACATTGACGGGAAGAACGATCGTAGACTCGATGATTGCTTGCGGTATTGCCTCGTGAGCGGGAAGAAAGCTCTGGAAAATGCTGATCTCGCTCCCGGAACTGTTGCTATCAACAAGATTGATAAAGCACGAGCTGGCGTCCTCGTGGGAACAGGCATGGGCGGGCTGACTATGTTTTCCAATGGTGTTCAAGCTCTCATTGACAAAGGTTACAGAAAAATAAGTCCATTTTTTATTCCATACTCCATAACCAACATGGCTTCTGCTTTGCTTGCTATGGACATCGGTTTCATGGGTGCCAACTACTCAATTTCTACTGCTTGTGCTACATCCAATTACTGCTTCTATGCTGCTGCAAACCATATTCGCCAAGGAGAGGCTGATATAATGATAGCTGGAGGAACTGAAGCTGCTATTATTCCCATTGGTGTTGGGGGATTTGTTGCATGTAGAGCTTTATCTCAAAGAAATGATGAACCTCATACTGCATCAAGACCTTGGGATAAGGGCCGTGATGGATTTGTTATGGGTGAAGGTTCTGGAGTACTGGTGATGGAGAGCCTGGAACACGCTATGAAACGTGATGCACCAATTATTGCTGAGTATCTGGGAGGTGCTGTTAACTGTGATGCCTATCACATGACTGACCCCAGGGCTGATGGTCTTGGTGTGTCAACTTGTATGGTGAAAAGTTTTGAAGATGCCGGTGTAGCTCCGGAAGAGGTTAATTATATAAATGCTCATGCCACATCTACGCTAGCTGGGGACCTCGCAGAAGTGAACGCTATAAAAAAAGTGTTCAAGAATACAAAGGATATCAAAATGAATGCAACCAAGTCCATGATAGGCCATTGCCTCGGAGCCGCTGGAGGTTTGGAAGCCATTGCTTCCATAAAGGCTATTACCACTGGGTGGCTGCATCCCTCTATAAACCAATTCGATCCCGAGCCAGCAGTAGAATTTGATACAGTGGCCAACAAGAAGCAGCAGCATGAAGTCAATGTTGCCATTTCCAATTCCTTTGGGTTCGGAGGACACAATTCGGTCGTCTTGTTTGCACCATTTAAGCCATGAGAATGCTCCTTTACTGAGAGGCTTCAGTTTGCCTAGCCGACACTTGGCGACGTATAAATGACACCAGGCTTCCTCATTTTTTGCACTACAGGCAGGTTTTAATGCTGTTCCACATCAATAACAGATTGTCGTTTCTGTTTACATTTGTAATTGGTCTATTGATTTTATTTGATCTGCTAGTATTATTTGTTGAGCTTTACGATCTCTTCTTTGTTTATTCTTTATTTTAGGCGGCGATTTTATCTCTCTTTGAAGGTCTCTTAGTATTCTATTTTGTTTTCATATCGTGTACTCGATAAAGTTGTTTGTTATTGAAGCGCATGAAAAGCTTAGTTGATCTGAAATCACAATTCAATGCTTGAGGCTTGCTCTCTCCAATTTATTTTTTATTTTGGAGCTGTTTGGCATAAAAAAAATTGATTGTCAAGTAATTTGATTACAATGAAATTTGATTACA

Network for GWHGAAEX009550

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00109.25	ketoacyl-synt	63	311	3.10E-58
PF02801.21	Ketoacyl-synt_C	320	431	8.70E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09458	fabF, OXSM, CEM1	Metabolic pathways	map01100
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780

Gene Ontology

GO term	Ontology	Name
GO:0006633	Biological Process	fatty acid biosynthetic process
GO:0016747	Molecular Function	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.640
SRP064423	SRR2545915	Juvenile tuber	26.400
SRP108465	SRR5643513	five period of Gastrodia elata	28.200
	SRR5643514	five period of Gastrodia elata	32.070
	SRR5643515	five period of Gastrodia elata	27.010
	SRR5643524	five period of Gastrodia elata	25.820
	SRR5643525	five period of Gastrodia elata	13.550
	SRR5643528	five period of Gastrodia elata	17.670
	SRR5643658	five period of Gastrodia elata	11.580
	SRR5643659	five period of Gastrodia elata	39.620
	SRR5643660	five period of Gastrodia elata	38.080
	SRR5643661	five period of Gastrodia elata	42.060
	SRR5643662	five period of Gastrodia elata	39.910
	SRR5643663	five period of Gastrodia elata	49.460
	SRR5643664	five period of Gastrodia elata	31.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	43.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	37.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.050
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	57.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	57.260
SRP279888	Gastro	Gastrodia elata tuber	30.20
	Juven	Juvenile tuber	31.11
	Mother_Gastro	Mother tuber of Gastrodia elata	8.56
	Mother_Juven	Mother tuber of Juvenile	14.74