Gene detail

Detail information of GWHGAAEX009559/evm.TU.scaffold_25.171

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|302348751\|ref\|YP_003816389.1\|	6.00E-55	AAA family ATPase [Acidilobus saccharovorans 345-15]
KOG	KOG0737	0	AAA+-type ATPase
nr	gi\|672162511\|ref\|XP_008801074.1\|	0	PREDICTED: uncharacterized protein LOC103715277 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9SEX2\|KTNA1_ARATH	4.00E-61	Katanin p60 ATPase-containing subunit A1 {ECO:0000255\|HAMAP-Rule:MF_03023}
trEMBL	tr\|A0A067K7B0\|A0A067K7B0_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP28140.1}
TAIR	AT1G02890_2	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	5427906	5479600	-

Transcript Sequence
>GWHTAAEX009559 CCGTTTTACAAAATAAAAATCAGGAATAAAAGTAAAGCTTCTTTCCCAGTTTCCGGATACCAATCGGACTTGCAATATATTAACAAAATGCATAAATAATTTATCTTTTGTCATTAATAATGGCAGCACTGCCGGCTTAATATCGCATTATCTCCGTTCTGCATTTTCCCTCTGCAGCTACTTTACTATCTCTCTCTATCTGCGTTTCTCTTTCCCCGCTTCCCTCCCCCCTCCCTCTCTCTCTTTCTCTGTATCTAAAAGGCAAGCTCAGATCGCTGTGGGGAAGGGTGGGAATGGTGGAAACGCGCCGGAGCTCATCTTCTTCGAAAAGGTCGTCGTCTTCGACCTCTACGGGTGCCGCCAAGCGCTGTAAGGCGGATGTAACAGCGTCGGTGGAAGTCGACAAGGGGGCGGAGGAGGAGCTTCGCTCTGACCTTAGCCGCGTGGATCGTGCCGTTGGAGAGACTGCGGCTGCGCCGGAGAAGGAGAGTGCTGCACCGTCCGTGCAGGATGGGATCCATCCCCATGGGCGAGGAGAACCTCCCGTAGAACAACTGCTGAAGGTCTTAAATCTACCGAAGAGGCAGGTGGAGAAAGCGCAGAAACGATCAAAGGTTCCATGGGGAAAACTGCTGTCTCAGTGTTCTAAGAGCCCCCATCTTCCCATATATGATTCTAACTTCACTGTTGGCCAAAGCCGGCACTGCAATTTGAGATTGAAGGATCCATCTATAAGTACAGTTCTCTGTAAATTGAAGCATGAGGAGCATGATGGTTCATCGGTTGTCTCACTTGAGATGCTGGGGGATAAGGGATTAGTACAAGTGAATGGCAAGATTATTGCACAAAATGCCAGTGTCGTACTCAGTGGAGGGGATGAGTTGGTTTTCAGTTCTTCTGGGAAGCATGCATATATCTTCCAGCAACTTTCCCATGCAAGTCGCCCGACTTTTCATTCCTCATGCAGTATTGAAGATGCACAAAGCGAGTCCATGAAAGGGATTCCTTTGGATACGAGAATTGGAGATTCATCTGCTGCTGATGGAGCTTCAGTACTAGCATCCTTCCCAAACCTTAGCAAAGATCTTGCAGCTCTTCGATGCTCACAACCAAATGGTGGAACCGGATTATCTTCTGAGGTGGATGTGGTTGGGGATACCTACAGAAAACAGGAGGATAAATGTGAGAATCTTCTTATAGAAACAGATTCTAGGGCAACATCTAATAGGTGCCAAGTCTTCAAGGATGGCTTGAGAAAGGGCATTTTAAATTCCAGTGACATTGATGTGACATTTGATTCGTTTCCATATCATTTAAGCGAGAGTACAAAGAATGTGCTTTTATCATGCGCATTTGTTCACTTGGAGTGTAGGTCTTGCTCCAAGTATGTTACAGAAATATCTTCTTTGAGCCAACGTGTACTTTTGTCTGGTCCAACCGGTTCTGAAATCTATCAAGAAACCTTAGCCAAGGCCCTCGCCAAACACTTTGGTGCCAAGCTACTCATTGTTAATTCTCTTTTGTTGCCTGGTGGTCCATCAGCAAAGGATTCAGAATCACTACCAAAAGAAGGTGCAAAGATAGACAAATTGGCCAGTCTTCTTGCTAAACAACGATCTTCCGTAGCCGATATGTCGCAATTCAAGAGACCAACATCAACGGTAGAAGCTGATATTGTTGGCGCATCCTCTTGCAATTTGCATTCTCTACCAAAGCAGGAGTCTTCAACTGCAACATCAAAGCCGTACACATTTAAGGAAGGTGACCGAGTAAAATATGTTGGTCCCTCAAATCCCATGGGGTTCCCTCATGCTCAAAGGGGACCAAACTATGGTTTTCGTGGAAAAGTACTTCTTGCATTTGAAGAAAATGGATCCTCAAAAATTGGAGTTAGATTTGATAAACAAGTACTTCAAGGCAACGATCTTGGAGGCTTGTGTGAAGAAGATCATGGTTTTTTCTGTTCTGCTGATTTACTTCGTTTGGACCCTATTGGAGGTGAAGAGAAAGAAAAACTTGCTATTAATGAATTGATTGAGGTTGCATCTGAAGAAAGCAAACATGGTCCTTTAGTTATATTTATCAATGACATAGAGAAATCCTTAGGTGCATACGTGGATTCCTTTTCTTCTTGTAAGGGTGAGCTGGAATCAATGCCAGCAGGCGTTCTTGTAATTGGCTCACACATACAAATGGACAACCGCAAAGAGAAATCACATCCAGGTGGCCTCTTGTTTACAAAATTTGGAAGTAACCAGACAGCCCTTCTGGACTTTGCTTTTCCGGATAGTTTTGGTAGACTACATGAAAGAAGCAAAGAAATTCCAAAAACGATGAAGCAACTTATGAAAATCTTTCCCAATAAAATTACCATCCAACCACCACAGGATGAAGCTCAACTTTTGGATTGGAAGAGCCAACTTGACCATGATACTGAAGCTCTAAGAGCAAAATCAAATATTTTGAGCATTCAATCTTTTGTTAACCGTATTGGATTGGAATGCAATGATCTCGAAGCCATTAGTATAAAGGATCAGACACTGACAAATGAAAGTGTGGACAGGGTAATTGGTTTTGCTCTGTGTCATCATCTCAAGAATTGTAAATCTGAAGCTTCTGCTGATCCTAGGCTCATTCTTTCTTGTGAGAGCGTAAAGTATGGACTCCAAATGCTGCAAAGTTTCCAGAGTGATGTGAAGAGTTCAAAGAAATCATTAAAGGATGTGGTTACTGAGAATGAATTTGAAAAGCGGCTACTTACTGATGTTATAGCCCCTAGTGACATAGGAGTTACATTTGATGACATTGGTGCTTTGGACAATGTGAAGGCGACATTGAAAGAATTAGTGATGCTTCCATTGCAAAGGCCAGAACTATTTTGCAGAGGACAGTTGACAAAGCCTTGCAAGGGAATTTTACTTTTTGGCCCTCCTGGCACTGGAAAAACGATGCTTGCTAAAGCTGTCGCAACTGAGGCAGGTGCACACTTCATCAACATATCAATGTCAAGCATCGCTTCAAAATGGTTTGGAGAAGGAGAAAAATATGTCAAAGCTGTTTTTTCATTAGCAAGCAAAATTGCCCCCAGTGTTGTTTTTGTTGATGAGGTTGATAGCATGTTGGGCCGACGAGAAAATCCAGGGGAACATGAAGCTATGCGAAAGATGAAAAATGAGTTTATGGTAAATTGGGATGGACTTCGAACAAAAGATAAAGAGCGTGTACTTGTCCTTGCAGCTACTAATAGACCTTTTGATCTTGATGAAGCTGTAATAAGGAGGCTTCCCAGGAGGCTGATGGTAAATTTACCAGATGCATCAAATAGGGAAAAGATTCTCAGAGTAATATTAGCAAAAGAAGCTTTGGCGCCAGATGTTGATTTGGAGGCCATTTCAAATATGACCGATGGGTATTCAGGAAGTGATCTAAAGAATCTATGTGTTACTGCTGCACACTGCCCAATTAGAGAGATTTTGGAAAAAGAAAAGAAGGAACTAAATCTCGCTTTAGCTGAGAGTAGACCGCTGCCACAATTGTATTCCAGTCAGGACATACGCCATCTGAGCATGGATGATTTGAGATATGCTCATGAACAGGTTTGTGCGAGTGTATCATCTGAATCTACAAATATGAAAGAGCTAATTCAGTGGAATGAACTTTATGGGGAGGGTGGATCGAGGAGGAAGAGTTCTCTAAGTTATTTCATGTAGCTTATGTTTGTATATATTATTTTTTTGTCTTTTGATCTTTTCTTGCCTTTCTTTTTCCTTTTTTTCTTCTTCTTAAATCTTGTGGATCAGAGAGTTCTATGATCAATTTATAGGTAATAGCACTCATTTTCTCGGTTTATTTATTGTAAATTTCATGCATGGAAGATCATCAGGCAATTGTTGTATCGAGTATTTAACAAAAATGCAAATTCGAGCATAAAGCTTTAACAGCATAGGCTTGCTTTCTTCTTCTTATGCTGTGCTTCCCCATAAGCTAACCAAAAACCAGTATTGATGGCTG

Network for GWHGAAEX009559

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00498.25	FHA	131	199	1.60E-05
PF00004.28	AAA	874	1003	4.00E-36

Protein Sequence

>GWHPAAEX009559
MVETRRSSSSSKRSSSSTSTGAAKRCKADVTASVEVDKGAEEELRSDLSRVDRAVGETAAAPEKESAAPSVQDGIHPHGRGEPPVEQLLKVLNLPKRQVEKAQKRSKVPWGKLLSQCSKSPHLPIYDSNFTVGQSRHCNLRLKDPSISTVLCKLKHEEHDGSSVVSLEMLGDKGLVQVNGKIIAQNASVVLSGGDELVFSSSGKHAYIFQQLSHASRPTFHSSCSIEDAQSESMKGIPLDTRIGDSSAADGASVLASFPNLSKDLAALRCSQPNGGTGLSSEVDVVGDTYRKQEDKCENLLIETDSRATSNRCQVFKDGLRKGILNSSDIDVTFDSFPYHLSESTKNVLLSCAFVHLECRSCSKYVTEISSLSQRVLLSGPTGSEIYQETLAKALAKHFGAKLLIVNSLLLPGGPSAKDSESLPKEGAKIDKLASLLAKQRSSVADMSQFKRPTSTVEADIVGASSCNLHSLPKQESSTATSKPYTFKEGDRVKYVGPSNPMGFPHAQRGPNYGFRGKVLLAFEENGSSKIGVRFDKQVLQGNDLGGLCEEDHGFFCSADLLRLDPIGGEEKEKLAINELIEVASEESKHGPLVIFINDIEKSLGAYVDSFSSCKGELESMPAGVLVIGSHIQMDNRKEKSHPGGLLFTKFGSNQTALLDFAFPDSFGRLHERSKEIPKTMKQLMKIFPNKITIQPPQDEAQLLDWKSQLDHDTEALRAKSNILSIQSFVNRIGLECNDLEAISIKDQTLTNESVDRVIGFALCHHLKNCKSEASADPRLILSCESVKYGLQMLQSFQSDVKSSKKSLKDVVTENEFEKRLLTDVIAPSDIGVTFDDIGALDNVKATLKELVMLPLQRPELFCRGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAHFINISMSSIASKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDASNREKILRVILAKEALAPDVDLEAISNMTDGYSGSDLKNLCVTAAHCPIREILEKEKKELNLALAESRPLPQLYSSQDIRHLSMDDLRYAHEQVCASVSSESTNMKELIQWNELYGEGGSRRKSSLSYFM

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	118.640
SRP064423	SRR2545915	Juvenile tuber	103.220
SRP108465	SRR5643513	five period of Gastrodia elata	58.320
	SRR5643514	five period of Gastrodia elata	54.020
	SRR5643515	five period of Gastrodia elata	51.580
	SRR5643524	five period of Gastrodia elata	50.800
	SRR5643525	five period of Gastrodia elata	49.970
	SRR5643528	five period of Gastrodia elata	48.740
	SRR5643658	five period of Gastrodia elata	59.890
	SRR5643659	five period of Gastrodia elata	47.020
	SRR5643660	five period of Gastrodia elata	52.620
	SRR5643661	five period of Gastrodia elata	44.110
	SRR5643662	five period of Gastrodia elata	48.580
	SRR5643663	five period of Gastrodia elata	44.850
	SRR5643664	five period of Gastrodia elata	54.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	92.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	76.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	80.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	116.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	116.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	140.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	113.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	111.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	65.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	80.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	57.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	57.790
SRP279888	Gastro	Gastrodia elata tuber	58.40
	Juven	Juvenile tuber	83.87
	Mother_Gastro	Mother tuber of Gastrodia elata	65.35
	Mother_Juven	Mother tuber of Juvenile	96.81