Detail information of GWHGAAEX009560/evm.TU.scaffold_25.172
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428216438|ref|YP_007100903.1| | 2.00E-06 | GTP-binding protein HSR1-like protein [Pseudanabaena sp. PCC 7367] |
| nr | gi|672199073|ref|XP_008777519.1| | 0 | PREDICTED: translocase of chloroplast 159, chloroplastic-like [Phoenix dactylifera] |
| Swissprot | tr|O81283|TC159_ARATH | 0 | Translocase of chloroplast 159, chloroplastic |
| trEMBL | tr|W5AA07|W5AA07_WHEAT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_1BS_82B47CBF7.2} |
| TAIR | AT4G02510 | 0 | translocon at the outer envelope membrane of chloroplasts 159 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 5499685 | 5504174 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009560
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04548.15 | AIG1 | 763 | 921 | 8.30E-25 |
| PF11886.7 | TOC159_MAD | 1125 | 1389 | 1.10E-126 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005525 | Molecular Function | GTP binding |
| GO:0016817 | Molecular Function | hydrolase activity, acting on acid anhydrides |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 104.290 |
| SRR2545915 | Juvenile tuber | 82.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.320 |
| SRR5643514 | five period of Gastrodia elata | 31.860 | |
| SRR5643515 | five period of Gastrodia elata | 29.730 | |
| SRR5643524 | five period of Gastrodia elata | 30.990 | |
| SRR5643525 | five period of Gastrodia elata | 27.150 | |
| SRR5643528 | five period of Gastrodia elata | 22.290 | |
| SRR5643658 | five period of Gastrodia elata | 26.240 | |
| SRR5643659 | five period of Gastrodia elata | 60.070 | |
| SRR5643660 | five period of Gastrodia elata | 72.140 | |
| SRR5643661 | five period of Gastrodia elata | 58.260 | |
| SRR5643662 | five period of Gastrodia elata | 82.710 | |
| SRR5643663 | five period of Gastrodia elata | 81.760 | |
| SRR5643664 | five period of Gastrodia elata | 81.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 52.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 44.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 53.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 45.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 49.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.880 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 36.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 36.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 65.91 |
| Juven | Juvenile tuber | 56.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.77 | |
| Mother_Juven | Mother tuber of Juvenile | 32.07 |