Detail information of GWHGAAEX009561/evm.TU.scaffold_25.174


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428305262|ref|YP_007142087.1|7.00E-70ATP-dependent Clp protease proteolytic subunit [Crinalium epipsammum PCC 9333]
KOGKOG08402.00E-140ATP-dependent Clp protease, proteolytic subunit
nrgi|672132663|ref|XP_008789917.1|1.05E-161PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Phoenix dactylifera]
Swissprottr|Q8L770|CLPR3_ARATH9.00E-154ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic (Precursor)
trEMBLtr|A0A068V9A0|A0A068V9A0_COFCA2.00E-152ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}
TAIRAT1G091302.00E-140ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003055170915557050-
Transcript Sequence

Network for GWHGAAEX009561

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00574.22CLP_protease1192982.30E-45
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006508Biological Processproteolysis
GO:0004252Molecular Functionserine-type endopeptidase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms87.700
SRR2545915Juvenile tuber112.020
SRP108465SRR5643513five period of Gastrodia elata52.590
SRR5643514five period of Gastrodia elata48.030
SRR5643515five period of Gastrodia elata52.930
SRR5643524five period of Gastrodia elata45.000
SRR5643525five period of Gastrodia elata39.070
SRR5643528five period of Gastrodia elata36.540
SRR5643658five period of Gastrodia elata46.090
SRR5643659five period of Gastrodia elata60.940
SRR5643660five period of Gastrodia elata63.280
SRR5643661five period of Gastrodia elata55.840
SRR5643662five period of Gastrodia elata97.640
SRR5643663five period of Gastrodia elata84.040
SRR5643664five period of Gastrodia elata88.940
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_160.390
SRR6049655Rhizomagastrodiae_C368-T10_good_162.980
SRR6049656Rhizomagastrodiae_C368-T07_good_153.220
SRR6049657Rhizomagastrodiae_C368-T07_good_153.470
SRR6049658Rhizomagastrodiae_C368-T04_good_139.080
SRR6049659Rhizomagastrodiae_C368-T04_good_138.310
SRR6049660Rhizomagastrodiae_C368-T01_good_147.680
SRR6049661Rhizomagastrodiae_C368-T04_good_142.360
SRR6049662Rhizomagastrodiae_C368-T01_good_149.770
SRR6049663Rhizomagastrodiae_C368-T01_good_144.750
SRR6049664Rhizomagastrodiae_C368-T10_good_143.680
SRR6049665Rhizomagastrodiae_C368-T10_good_143.680
SRP279888GastroGastrodia elata tuber 67.19
JuvenJuvenile tuber52.64
Mother_GastroMother tuber of Gastrodia elata 75.87
Mother_JuvenMother tuber of Juvenile 72.46