Detail information of GWHGAAEX009565/evm.TU.scaffold_25.179
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|347524208|ref|YP_004781778.1| | 7.00E-55 | 30S ribosomal protein S4E, central domain containing protein [Pyrolobus fumarii 1A] |
| KOG | KOG0378 | 0 | 40S ribosomal protein S4 |
| nr | gi|743844762|ref|XP_010938423.1| | 0 | PREDICTED: 40S ribosomal protein S4-3 [Elaeis guineensis] |
| Swissprot | tr|P46300|RS4_SOLTU | 0 | 40S ribosomal protein S4 |
| trEMBL | tr|B3TM21|B3TM21_ELAGV | 0 | 40S ribosomal protein S4 {ECO:0000256|PIRNR:PIRNR002116} |
| TAIR | AT5G58420 | 0 | Ribosomal protein S4 (RPS4A) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 5598887 | 5603765 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009565
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08071.11 | RS4NT | 3 | 39 | 9.70E-20 |
| PF01479.24 | S4 | 47 | 90 | 1.40E-06 |
| PF00900.19 | Ribosomal_S4e | 95 | 169 | 9.60E-37 |
| PF00467.28 | KOW | 177 | 210 | 3.60E-06 |
| PF16121.4 | 40S_S4_C | 212 | 258 | 1.40E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02987 | RP-S4e, RPS4 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 325.670 |
| SRR2545915 | Juvenile tuber | 309.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 615.010 |
| SRR5643514 | five period of Gastrodia elata | 570.750 | |
| SRR5643515 | five period of Gastrodia elata | 531.310 | |
| SRR5643524 | five period of Gastrodia elata | 523.350 | |
| SRR5643525 | five period of Gastrodia elata | 382.550 | |
| SRR5643528 | five period of Gastrodia elata | 362.230 | |
| SRR5643658 | five period of Gastrodia elata | 298.380 | |
| SRR5643659 | five period of Gastrodia elata | 604.860 | |
| SRR5643660 | five period of Gastrodia elata | 655.570 | |
| SRR5643661 | five period of Gastrodia elata | 683.580 | |
| SRR5643662 | five period of Gastrodia elata | 567.740 | |
| SRR5643663 | five period of Gastrodia elata | 576.950 | |
| SRR5643664 | five period of Gastrodia elata | 578.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 520.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 555.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 595.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 522.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 474.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 385.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 551.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 491.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 695.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 636.470 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 686.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 686.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 695.84 |
| Juven | Juvenile tuber | 827.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 360.76 | |
| Mother_Juven | Mother tuber of Juvenile | 528.58 |