Gene detail

Detail information of GWHGAAEX009568/evm.TU.scaffold_25.181

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|89894130\|ref\|YP_517617.1\|	7.00E-65	hypothetical protein DSY1384 [Desulfitobacterium hafniense Y51]
KOG	KOG0386	0	Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily)
nr	gi\|743825873\|ref\|XP_010933130.1\|	0	PREDICTED: ATP-dependent helicase BRM-like [Elaeis guineensis]
Swissprot	tr\|Q6EVK6\|BRM_ARATH	0	ATP-dependent helicase BRM
trEMBL	tr\|F6I645\|F6I645_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62441.1}
TAIR	AT2G46020	0	transcription regulatory protein SNF2, putative

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	5636270	5655148	+

Transcript Sequence
>GWHTAAEX009568 AGCAGCAGCAGCAGCAGCAGCAGCTACAACTAAGAAAACCTGAAAAGAGAATCTTGTAACTTGTAAATTAGGTACCATGCATGGAGTCATTGGTGGCAGCAACTTCTCATCATCTTCTGGTGTACCTGCATCAAGATTTCCTAGGAACTTGCCCAACGACTATACTAGACAACTTCACGAGAAAAAGCAAAGTGGACATGTTTTAGAGCAGCCACATAACTCAATGCACAAAACTTATGCTCAATTTTCTATGCAAGATGCTCCACAGCAGCAGAGAGAACATGACAGCCTTCCACTGCAACGAGAAGGTGAATTTAGCATGATGGGACCACCTAGTGGTGGTCAAGAGGTATCAGTTGGAAATCTTAAAACACAGGAAATAATACATGCTAAAGCATCAAACCAAGTACAACTATTGAGATTTGGTAATTCAGTTGATCATGCATATACTGAGAAACTGAATGAACAAGGCCATATGTATGATGGCCAGAAACATGAATTGAAGGCTTCCCAAGGTGTAACTGAACTGTTTACGCCAGCAAATATGATTAAGACAATTCAGTCGCTCCAATCACAAGGAAATATGGAAAACATTGTGAACAACCAATTGATACTGGCTCAGTTGCAAGCTATGCAAAATTGGGCAATAGAACACAGTATTGATCTTACACATCCTGCCAATGCTAATCTGCTAGCTCAGTTTCTTCCGATTTTGCAATCGAATAGGTCAGTTGCTACACTCAAATCAATTGTTAGCTGCCCACCTTCCCAACAATCAAGCTTGCCTACTTTGAAGCCACAGTTTATCTCATCTCCAGTTAGTGAAAATTCTGCTCAAGGAAATTCAACTAATAAATCTGATCAGACTGCAATGATAAGAAATGGTGTTGGTATGTTCACAGCAAATTCCAAGAATATGTTTATGCAGCAACCTCAGACTATTCAGGAGCTTGCTACTCAAAATGAGAGGGGTGATGATGCACATACACTAGCATCAGCTAATTTAGAATCAGCGGCACATCTGTCACAGGGTTCTGTCTGTTCAAACCAAAGTGTTGATATTTCAAATTGCAAGAAATTGGTGGCAACTGATTTAATGCAAATGCAATCTTTTAGGCAGTCCCAAAACCTTGGGTATCCAACTCAGGCGGCTTTCCTGTCAAGTGAAGTTGCTGGGAGTCATATGCTTGCTAGAGGGTCAGAGCTGACTCGACAGCAGCATGTTGGATTTACTAAGCAACAGCTTCATGTTCTTAAAGCACAAATATTAGCTTTTAGAAGACTCAAGCGCAGAGAAAATTCCCTTCCGCCTGAAGTTCTTCAATCAATTGTACCGCCCCCTCTTGATTCAAAGATGACTAAGCAGGAAAAAATTATAGGAGAAAATACTGCGGAGCATGAAAGGCTTATGGAAAATAACAATGTCCCCCAACCTCAGCTTACTTTTCTGAGTAAGGGTCACAGTCTTCCAAAGGAGTTTACTGTTGGTGATGAGAAAACATCCACCTTGCCAGTAGAGGCAGTAGCAGCGCCAAAGGACAGTTCAAGGATTATTACTACTGGGAAGATTCCAGACATTTACCCTGCTTCTGTAAAGGCTGAGCAAGATGTTGATCAAGACAGCTCTTTTAAGAGTGAGAATGATGCTGACAGGCAAAGTTCTGTTCCTTCAACTAGTGCTTCAGCTGATAATAGGAAAATGAAGAAGCTTACCACAGCAAATGTAACTGCACCATCAGATTCCAAAAAGTATCATGGTCCACTTTTTGATTTTCCTTCATATACCAGAAAGTATGACCTTTTGGGCTCGACAATTGCTAACAACTTGAACAGTTTCATGTTTGCCTATGACTTAAAAGAATTGTTATATGAAGAAGGCAGGGAAGTGCTAAAAAAGAAAAGGACTCTGTGCTTGAAGAAACTTGGCAGTTTACTTGCATTTGATGTTGCAAAGAAAAATATTAAGCCTGATCTTTTCTTGAGGCTGCAAATTCAAGAGAAAAAGCTTCGTCTTTTAGATATTCAGGCTCGCTTGAGGGATGAGGTCGATGAACAGCAGCAGGAGATAATGGCCATGTCAGACAGGCCTTACCGGAAATTTGTTAGACAATGTGAGCGCCAACGGTTGGAACTTTTGAGACAAGTGCAGCAGTTACAAAAGGCAACGAGGGAAAAACAACTAAAGTCTATCTTCCAATGGCGCAAGAAACTCCTGGAAACTCATTGGGCTATTCGTGATGCACGAACTACTCGCAACCGGGGCGTGGCTAAGTATCATGAGAAAATGTTAAGGGAGTTCTCTAAAAGGAAAGATGATGATCGTAGTAAAAGAATTGAGGCCTTGAAAAACAATGATGTTGATAGATATCGAGAAATGCTTCTAGAGCAACAAGCAAGTATTCATGGAGATGCTTCTCAACGATATACTGTTCTGTCATCTTTCTTGTCTCAAACAGAGGAGTATCTTTGCAAACTTGGAACCAAAATAACAACATCAAAGAAGCAACAAGATGTTGATGAGGCTGCTAATATTGCTGCAGCTGTTGTACGATCTCAGGGCCTTTCAGAAGAGGAAGTCAAAGCTGCTGCTGCATGTGCTCGAGAGGAGGTAATGATTAGGAACACATTCTCTGAGATGAATGCACCTATAGATGGCTCATCGGTTAACATGTACTATAATCTTGCACATACTGTCAATGAAAGAGTTCTAAGGCAACCATCAATGTTACGTGCTGGAACCTTGAGGGATTATCAACTCGTTGGGCTTCAGTGGATGCTTTCCTTGTACAACAACAAGTTAAATGGTATTTTAGCAGATGAGATGGGTCTTGGAAAAACTGTACAGGTCATGGCATTGATTGCTTATTTGATGGAGTTCAAAGGAAATTATGGGCCTCATCTCATTATAGTACCAAATGCTGTCTTAGTAAATTGGAAGAGCGAACTGTACAATTGGTTGCCATCTGTATCATGTATATTTTATGTTGGCGCAAAGGAAGAGCGATCAAGGGTATTCTCTCAAGAAGTCTGTGCTATGAAATTTAATGTGCTCGTTACTACCTATGAGTTTGTAATGTACGATCGGTCCAAGCTATCAAGAATTGATTGGAAGTATATTATTATTGATGAAGCCCAACGAATGAAGGACAGAGAGTCAGTTTTAGCTCGGGATCTTGATAGGTATCGCTGCCAAAGAAGATTGCTACTTACTGGTACACCCTTACAGAATAATTTGAAGGAACTCTGGTCTCTTTTAAATCTTCTCCTTCCAGAAGTATTTGACAATCGGAAAGCATTTCATGATTGGTTTTCAAAGCCCTTTCAAAAGGATGGTTCATCACATAACCAGGAGGAGGATGATTGGCTTGAAACTGAAAAGAAGGTGATTGTCATCCACAGGCTTCATCAAATTCTGGAACCTTTCATGCTTAGGCGACGGGTTGAGGATGTGGAAGGATCACTTCCTCCCAAGGTATCAGTTGTTTTGAGGTGTAGAATGTCTGCTTTGCAGGGTGCCATATATGACTGGATTAAATCCACTGGCACCATCAGGGTAGACCCTGACGATGAGTTGCACAAGGCTGAGAGGAATCCAATGTATCAGATTAAAATGTATAAGAATCTTAATAATAAATGCATGGAGTTACGTAAGGCGTGTAATCATCCTTTGCTCAACTACCCTTATTTTAATTATTATTCAAAAGAATTTCTTGTTAAGTCATGTGGGAAACTCTGGGTCCTTGATAGGATTCTCCTGAAACTTCAAAAAGCAGGGCATCGTGTTCTTCTTTTTAGCACTATGACCAAACTCCTTGATATACTTGAGGAATATTTACAATGGCGTCATCTTGTCTATAGAAGAATTGATGGATCAACCAGCTTAGAAAATCGCGAGTCAGCAATTGTTGATTTTAATAGCCATGTTTCTGACTGTTTTATCTTCTTGCTCAGCATTCGTGCTGCTGGAAGAGGCTTAAATCTTCAAAGTGCCGACACAGTTGTTATTTATGACCCGGATCCAAATCCGCAAAATGAAGAGCAAGCAGTAGCTAGAGCTCATCGCATTGGTCAAAATAGGGAAGTCAAAGTCATATATTTGGAAGCAGTTGTTGACAAGATCTCAAGCTTCCAGAAAGAGGATGAGTTAAGAAATGGTGGAAGTGGATATTCAGAAGGTATTCTTACTGGTAAACACAGATATATGGGTTCAATTGAAAGTCTTATTCGAAAAAACATTCAACAGTATAAGATTGAAATGGCGGATGAGGTTATAAATGCTGGACGTTTTGATCAAATAACAACTCATGAAGAAAGAAGAATGACTTTGGAGACATTGTTACATGATGAAGAAAGATATCAAGAAACAGTTCATGATGTTCCATCCATGTTAGAGGTAAACCGGCTGATAGCTCGGAGTGAAGAAGAAATTGAGCTATTTGATCAAATGGATGAGGAGTTTGATTGGATTGGAGGAATGACCAAGTACAATCAGGTTCCAGTGTGGCTTCGGGCTGGCTCCAAGGAATTAAATTCAGTTATTTTAAGGCTGCGTAAGAAGCAATCAAAGAACATCTTAGGCAGTGTTGACATGGAATCTGGTATTAAGACACCTACCTTATTCCCTAACAGAACAGAGAGAAAAAGAGGACTACCAAATTGCGTAGTAACTAAAAAACACTCGTCTTACATGGAATTTGAGGATGATAATGTTGAACATTCTGATGCTAGCTCAGAAGAAGGGAATGCACATTTCCTACGAGAGGAAGATAGAGAAGTAGAATTTATTGAAGAAGAAGAAGAAGAAGAAGGAGGCTCAAGTGGCACTGCTGATTTGCAAGGAAATATTAACGTTCCTTTGAATGAAGAAGGATTGGTTTGTAATGGCTATGAGTTCTTGAATGCTGTAGAGCGAAGTAAACATACTCATATGTGTGAGGACGCTGGATCTACTGGGTCCTCTTTTGGAAACAGAAGAGTGCTGCCGCCTATTACACCTTCCATCTATTTGCGTAACGTTGGATCTATTTCTGAATTGAATTCTCAATCAGGTGTTCTTCCAACAAAGTTAAATGAGCTTGAGGAAGGTGAAATTGCTGTGTCTGGTGAATCCCACCTAGAAATTCAGCAGTCTAGTAGTTGGAATCATTACCATGATGATGGTGAGGATGAGCAATTCATGAAGCCTAATTTTAAGCGCAAGCGCAGTCAACGCTTTCGCCCTAGACATGCTGTAGAAAGAATGGAAGAAAATTCTACTACTCGTAGGACTTTTCCGTGGCACGGACATCCATTTCTTTCACATGGTCATCATAATACTGGTATGCTTTCAAGAATGGACGGAGGAGGGATTGGGGAATTTAACGGCTCTTTCTTAAGTAGACGTGCCATATCACCCTCTTTGAAGCAGAGAAGTGACTTATCGACTAGAAGTGCTCCAATTATCAATAAACAGAAGTCAGTGGGATCTAGTTACTTGAATAGATGTGAAGATATCCTGGATCATTCAAGAGAAAGTTGGCATGGCCTGGCCAGTAATAATACTGGCCTTGGCCATGGCAGAAGAACAATGTCTGACAGTGTGCAGCGGAAGTGCAAGAATGTAATCAGCAAGCTGCAGAGGCGGATAGATAAAGAAGGCTATCAGCTTGTGCCTCTTCTATATGACTTCTGGAAGAAAATTTATTCCTCAACCACCGCAAACAAACTGTCGACGAACGGCCCGTTTAATTTGCGTACTATTGATCAGCGAGTTGACGGTTTAGAGTACGCCGAGGTCTCGGACTTCATCGTGGACGTGCAGTCAGTGCTGAAAAATGTGGTTCAGATTTGCAAATACTCTCGCGAAGTAAAATATGAAGCTAGAAAGCTGCAAGACATGTTTTTTCATATCATGAAGATCGCCTTTCCAGATTCTGATTTTCAAAAGGCAAAGATGGCACTCAACTTCTCAAGCACAGGCGGCCACCCCCCTACCGAATCAGCTCCACCTGCACTTCATATGAAACCATGCAGCAGCAGCATAGCCAACCACCACTATAAACTGCAGAAAATGGCTGGTGAGGTTCAACAGCATCACCTCAGCCATCTCCCTCCAATCCGAACATCAAATTACTATCCCATTAATAACAATAACAACAACAACAATAATAATAATAAAAGTAATCCCTTCTTCGGACTAGCTAATAACGCCGCGAGCCTTGAGAAGGAGACGACCGGACAGAGAAGCTCGCATTTCGGACAATTGCTGGCTCACCCTGGCGAACTTGTCGTCTGCAAGAGGAGGAGGAAGGACCGGGACAAACCCTCAACGAGGGTCACTTCGTTCTTTCGGGATGGGCCGTCGTTTCTATTCGGCTCGGATCGCAGTGGCGCCAGGCAAGCTCCGGCGAAGAAGGATCTGGCACCCTCGATCCCCAAGCAGCATATGGCTGCCAGGAGTGTCGATTTTATTGGCGGGGCGCTGGCAGGTATTGGCATTGGCGAGTTGCGATGGGCAAGACCAGCGAAGAGGTTGAGAACTGATAATGGGAAGAGAAGGCTGCCGCAGATCCTTCACTTGTAG

Network for GWHGAAEX009568

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08880.10	QLQ	385	418	6.40E-09
PF00176.22	SNF2_N	902	1198	2.20E-64
PF00271.30	Helicase_C	1222	1331	4.00E-17

Protein Sequence

>GWHPAAEX009568
MHGVIGGSNFSSSSGVPASRFPRNLPNDYTRQLHEKKQSGHVLEQPHNSMHKTYAQFSMQDAPQQQREHDSLPLQREGEFSMMGPPSGGQEVSVGNLKTQEIIHAKASNQVQLLRFGNSVDHAYTEKLNEQGHMYDGQKHELKASQGVTELFTPANMIKTIQSLQSQGNMENIVNNQLILAQLQAMQNWAIEHSIDLTHPANANLLAQFLPILQSNRSVATLKSIVSCPPSQQSSLPTLKPQFISSPVSENSAQGNSTNKSDQTAMIRNGVGMFTANSKNMFMQQPQTIQELATQNERGDDAHTLASANLESAAHLSQGSVCSNQSVDISNCKKLVATDLMQMQSFRQSQNLGYPTQAAFLSSEVAGSHMLARGSELTRQQHVGFTKQQLHVLKAQILAFRRLKRRENSLPPEVLQSIVPPPLDSKMTKQEKIIGENTAEHERLMENNNVPQPQLTFLSKGHSLPKEFTVGDEKTSTLPVEAVAAPKDSSRIITTGKIPDIYPASVKAEQDVDQDSSFKSENDADRQSSVPSTSASADNRKMKKLTTANVTAPSDSKKYHGPLFDFPSYTRKYDLLGSTIANNLNSFMFAYDLKELLYEEGREVLKKKRTLCLKKLGSLLAFDVAKKNIKPDLFLRLQIQEKKLRLLDIQARLRDEVDEQQQEIMAMSDRPYRKFVRQCERQRLELLRQVQQLQKATREKQLKSIFQWRKKLLETHWAIRDARTTRNRGVAKYHEKMLREFSKRKDDDRSKRIEALKNNDVDRYREMLLEQQASIHGDASQRYTVLSSFLSQTEEYLCKLGTKITTSKKQQDVDEAANIAAAVVRSQGLSEEEVKAAAACAREEVMIRNTFSEMNAPIDGSSVNMYYNLAHTVNERVLRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSVSCIFYVGAKEERSRVFSQEVCAMKFNVLVTTYEFVMYDRSKLSRIDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNNLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKDGSSHNQEEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPPKVSVVLRCRMSALQGAIYDWIKSTGTIRVDPDDELHKAERNPMYQIKMYKNLNNKCMELRKACNHPLLNYPYFNYYSKEFLVKSCGKLWVLDRILLKLQKAGHRVLLFSTMTKLLDILEEYLQWRHLVYRRIDGSTSLENRESAIVDFNSHVSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPQNEEQAVARAHRIGQNREVKVIYLEAVVDKISSFQKEDELRNGGSGYSEGILTGKHRYMGSIESLIRKNIQQYKIEMADEVINAGRFDQITTHEERRMTLETLLHDEERYQETVHDVPSMLEVNRLIARSEEEIELFDQMDEEFDWIGGMTKYNQVPVWLRAGSKELNSVILRLRKKQSKNILGSVDMESGIKTPTLFPNRTERKRGLPNCVVTKKHSSYMEFEDDNVEHSDASSEEGNAHFLREEDREVEFIEEEEEEEGGSSGTADLQGNINVPLNEEGLVCNGYEFLNAVERSKHTHMCEDAGSTGSSFGNRRVLPPITPSIYLRNVGSISELNSQSGVLPTKLNELEEGEIAVSGESHLEIQQSSSWNHYHDDGEDEQFMKPNFKRKRSQRFRPRHAVERMEENSTTRRTFPWHGHPFLSHGHHNTGMLSRMDGGGIGEFNGSFLSRRAISPSLKQRSDLSTRSAPIINKQKSVGSSYLNRCEDILDHSRESWHGLASNNTGLGHGRRTMSDSVQRKCKNVISKLQRRIDKEGYQLVPLLYDFWKKIYSSTTANKLSTNGPFNLRTIDQRVDGLEYAEVSDFIVDVQSVLKNVVQICKYSREVKYEARKLQDMFFHIMKIAFPDSDFQKAKMALNFSSTGGHPPTESAPPALHMKPCSSSIANHHYKLQKMAGEVQQHHLSHLPPIRTSNYYPINNNNNNNNNNNKSNPFFGLANNAASLEKETTGQRSSHFGQLLAHPGELVVCKRRRKDRDKPSTRVTSFFRDGPSFLFGSDRSGARQAPAKKDLAPSIPKQHMAARSVDFIGGALAGIGIGELRWARPAKRLRTDNGKRRLPQILHL

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
K11647	SMARCA2_4	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	73.090
SRP064423	SRR2545915	Juvenile tuber	56.280
SRP108465	SRR5643513	five period of Gastrodia elata	26.140
	SRR5643514	five period of Gastrodia elata	23.690
	SRR5643515	five period of Gastrodia elata	24.890
	SRR5643524	five period of Gastrodia elata	23.590
	SRR5643525	five period of Gastrodia elata	28.400
	SRR5643528	five period of Gastrodia elata	26.510
	SRR5643658	five period of Gastrodia elata	28.090
	SRR5643659	five period of Gastrodia elata	25.460
	SRR5643660	five period of Gastrodia elata	28.100
	SRR5643661	five period of Gastrodia elata	22.350
	SRR5643662	five period of Gastrodia elata	25.200
	SRR5643663	five period of Gastrodia elata	26.120
	SRR5643664	five period of Gastrodia elata	28.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	34.710
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.360
SRP279888	Gastro	Gastrodia elata tuber	31.41
	Juven	Juvenile tuber	46.03
	Mother_Gastro	Mother tuber of Gastrodia elata	41.28
	Mother_Juven	Mother tuber of Juvenile	57.92