Gene detail

Detail information of GWHGAAEX009570/evm.TU.scaffold_25.183

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2032	Uncharacterized conserved protein
nr	gi\|743776615\|ref\|XP_010918718.1\|	PREDICTED: protein SHOOT GRAVITROPISM 6 [Elaeis guineensis]
Swissprot	tr\|F4IP13\|SHGR6_ARATH	Protein SHOOT GRAVITROPISM 6
trEMBL	tr\|A0A067JZB9\|A0A067JZB9_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP29202.1}
TAIR	AT2G36810	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	5670292	5831324	-

Transcript Sequence
>GWHTAAEX009570 GCCCATCGTGCAATTTCTTACTCCCATTTCCAATCGATCAGTACCTTCTTCCTCATCCTTCCGGGCCCACCATGGCAATGGTCACTGCTACGCCCACGGCCGCGGCCTCTGGTTCTCCTCCCGCTCCAGAGGCTGTACTGGCACTTGTTTCCTCTCTCGCCGACGAATCCTCTATCGTTCGAGACGCCTCCGTCTCCGCCCTCAAGGAAATCGCCCCACTGAATCCTCTTCTCGTTCTCGATTGCTGCTGTTCTGTCACTAGAGGAGCACTCCGGCGGCTTGTAAACATGGCCTGCGTTTTTTCAGTGATGGCTTGCGCTACACGCTCTATGAATGAGAGAGATGTAGATCTTTCTCTGATGACAAAGCTTGCTAAAATCGCAATGACTGAGATAATTACCTCAAAGGAGTTGAATACTGAGTGGCAGAAAGCTGCAGCTAGTTTACTTGTTTCAATAGGATCCCATGTGCCTGATTTGATGATGGAGGAAATATTTTTTCATATTCCTGGAACTTATTCAGCTCTGCCAGCGGTTGTTCAAATTCTTGCAGATTTTGCTTCTGCTGAAGCTTTAAAGTTTACTCCTCGTCTGAAAGAAGTTCTTTTACGGGTGTTACCAATACTTGGAAGTGTTAAGGATGTTCAAAGGCCAATTTTTGCAAATGCATTTAAATGTTGGTGTGAGGCTGCTTGGCAATATATTGGTGACTTCCCTTCACGTCCATTTCTTGATAGTGATGTGATATCATTTCTGAATTCAGTGTTTGAATTATTGCTAAGGGATTGGGCGAAATCTCGTGACCTGAAGGTATGTCTGTCTTCTGTAGAGGCCTTAGGGAAAATGGTAGGTCTTGTCTCCAGGTCACAGCTAAAGGCAGCGTTACCAAGACTTGTTCCTACAATATTGAACTTATATTGTAAAGATCCAGAGATTGCTTTACTAGCCTCAAGCAGTTTACATAATATTCTTAATGCGTGCTTATTGTCAGAAAATGGTCCTCCACTGCTTGACTTTGAGGATTTAAATAATATTTTGAGTGCACTTCTTCCGGTGGCTTACATCAATAATAACAATGATGATTGTCCTGGCTTTTCGAAAGAACTAAAGACATACAATGAGATTCAGCATTGTTTTCTTGTTATTGGTTCAGTTTATTCAGAGGATCTTTATTCTTTTCTTCTAGGCAAATGCCAGACAAAGGATGAGCCTGCTGTAGTTGGAGCACTCTCTGTCATAAAGCATCTCTTGCCCAGGCTGTTGGAAGCTTGGCATTCTAAAAGGAATACACTTATCGAGGTTGTGACATCACTTTTAGTTGGGCAGAGTTTAGGTGTACGAAAGGCAATTGCAGAGTTACTTCTTGTTATGGCTTCACATTGCTACTTTGGTGGGACTTCTACGGAGTTGTTTATGGAATATCTTGTTCGCCATTGTGCTGTATTAAATGATGATGGAATATATTTGAAGCCCTCTAATGAGGTCATTTGGAAGGGAAATCCATTTCAACCTTTCTATAGGAAATATGAAGGGAATAAATCTTCTGCAAATACTATAAAGTTGAGAGCTATCTGTGAAAAGGGCCTTCTTTTACTGTCTATTACCATTCCAGAAATGGAGCATATTCTTTGGCCTTTCCTTTTAAATGTTATTATTCCCAAGGAATATACAGGAGCAGTTGCAATAGTTTGCAGGTGCATATCAGAGCTGTACAAACACCGATCATCTCGTGGTGGCAGCGTTTTGCTTAATAAATTTAGTTCAGCTCAAATTCCTGATCCTGAGGACCTTTTTGCACGTTTGACTGTCCTTCTTCATGATCCCCTTGCTCGAGGGAACTTGGCAACTCAGATTTTAACGGTACTGTGCCGAATAGGTCATCTGTTCCCAGAGAATCTTGAATTATTTTGGCAAGATGAGGTACCCAAATTGAAGGCATATATCAGTGACCCTGAAGATCTAAAGCAGAATATTTCATACCAAGAGACATGGGATGACATGATTATCAATTTCATATCAGAATCGTTAGATGTTGCACAGGACACTAAATGGGTCATTTCATTAGGCAATGCTTTTGAACGGCAATATGTTATGTACGTGGATGATGATGAACATGCAGCGATGCTTCATAGGTGTCTTGGCGTGCTTCTTCAGAAAGTGGATGACAAAATCTATGTACATGAAAAAATAGACTGGATGTATAGACATGCAAAAATATCAGTCCCTGCTAATAGGTTGGGACTTGCTAAAGGCATGGGGTTGGTATCTGCTTCTCATTTGGATACTGTATTGGAAAAGCTGAAAACAATCTTGGATAATGTTGGGCGGAATAGATTCCAAAAGCTGTTTTCCTTCTTCTCCTTCAGTTCCATGATTGATGATGCTGATGATATTCATGCAGCACTAGCTTTAATGTATGGGTATGCGGCAAGATATGCCCCATCAACAGTCATAGAAGCTAGAATTGATGCACTTGTGGGTACCAACATGCTCTCACGACTTCTTCATGTGCAGCATCATACATCAAAGCAGGCAGTAATTACATCAATTGAGCTGCTTGGTCGTGCTGTCATTAATGCTGCTGGGATGGGTATTTGCTTCCCACTAAAGCGAAGAGACCAGTTACTTGATTATGTAATTACGTTGATGGGCACTGAAGAAAGTTATAGTTTTGCTGATTCTAGTAATGAACTTCTCCATACTCAGAGCTTTGCTTTGAGTGCTTGCACAACTTTGGTTATTATAGAACCAAAGTTGCCATCTGAGACCAGAAATCGTGTTTTAAAGGCCACTTTAGGATTTATTACTTTGCCTGTTGAACCCTGCGACATAATTGATCCACTGATAAATAACCTAATTATTTTACTATGTGCAATTCTGCAAACCAGTGGTGAAGACGGCAAGAGTCGAGCCGATCAACTCCTGTATATTCTTAGAAAGATAGATACATATGTTTTGTCTGCTGTGGAGCATGAGAGAAGAAGAGGCTGCCTTGCTGTGCATGAAATGCTTCTCAAGTTCCGAGCTCTTTGCTCTGGTGGAATATGTGGGCTTGGGTGTCTTTCTAGTTGCACACACAATGTACAAACTGAAAATTCAAAGCAAAAAAAATTCTCAACCTTTGCATCTGTATATGTACTGCCATGTCGGGACTCTTTGAGTATTGGAGAGAGGATAATAACTTATATTCCAAGGTGTGCAGATGTGAGTTCAGAGGTTAGAAAAGTTGCAGTTCAGATCATAAGTCTTTTTTTCAGCATATCCTTATCACTTCCTTTGTTAACTGCATTTGGGAGTGATGCCCATCTAGAATCATCATATAATGCTTTATCTTCCATTGAAGATGTCATCTCAATGCTTCGAAGGGATGAATCCATTGACCAATCCGAAGTTTTCAACAGGATTGTAACATCTATCTGTATTTTGCTAACAAAAGACGAGCTTGTTATTTCCTTGCAAATGTGTACCTCTGCTATATGTGATAAGATTAAACAATCATCTGATGGTGCTATTCATGCCATCATTGAATTCATCACTACAAGAGGTTGTGAATTGAATGAAGCTGATGTTGCGAGGACAACTCAATCGTTAGTTTTGGCTGCTTCATTTGTATCTGATAAGCATTCACGTCAAGAAATTCTTCAAGCGACTTCATGTTTGGCGGAGTTCACTTTTTCGCAAGTCGTCTTTAATGAGGTTTTGGTTACTTCTGCTCGGGATATCAGTAAAAAAGATGTATCGAGACTGCGAGGTGGTTGGCCAATGCATGATGCATTCAATGCATTTTCGCAGCATGCCATACTTTCAAGTGTATTTCTGGAGTACATCGTATCTTCCCTCGATTGTTCTAGTGTTCCAAAACTTGACAATGATAAGGGTGAAAGTATTAACCATTCACTTGATTTGGTCTCTGATGGGGTCTTGCTGCAAGCAGCTGTGTTAGCCCTTACTGCTTTCTTCAGGGGGGGTGGCAAGACTGGAAAGAAAGCAGTGGAACAAAATTATTCCTCTGTACTTTGTGCACTTGTACTTCAACTGGGAAGTTGTCATGGTCTAGTAGCTGGCTTCGGTCATCAAGAATATCTGCGCGTTTTGTTAACAGCGTTCCACTCATTTTGTGATTGTGTGGGTGATCTTGAAATGGGCAAGATCTTGGCTAGGCATGGAGAAAATGATGATAGAGAGAAATGGATCGATGTAATTTTTGATATTACCTCTTGCATCTCTTTGAAGAGACCTAGGGAGATCCAACCTATATGTATGATTTTAAGCAAGGCTTTGAAGAGGCGCCAAAAGTTACAGAGGGAAGCTGCTGCTGCTGCATTGTCAGAATATATTCGCCACAGCGATGGAGTCCCCTCCTTACTAGAACAGCTTGTGGAGGGAATGTGTTTGCATGTATCAGATGAATCACCAGTTGTGAGAAGGCTGTGCTTGCGAGGACTTGTCCAGATACCAGAACGTCAAATGTGTCTTTACATTCCACAAGTTCTTGGGGTTATCATCGCCTTACTTGAAGACCATGATGAATCAGTTCAACTGACTGCTTTGCAGAGCTTATTGGAAGTTCTCAAGTCATGTCCGATAGATTCTTTGGACCCTGTTTTTATAAATTTGTCCATACGACTTCGAAATCTTCAGATCTCTATGAACGCAAATATGCGCTGCAATGCCTTTGCAGCTTATGGGATTTTAAGTGACTGCGCCACCACCACCATTCATCATCAGGCTTTTCTGGAGCAGGTTCATGCCTCTTTCCCACGTCTTCTCCTCCATCTTCATGATGAAGACTTGAGCGTTCGCCAAGCTTGTCGGAATACTTTCAAGAAACTTGCACCACTGATCGGAGCTGAGGGCTTACCTTCCCTCTCCAGCAAACACTATTTTAACTCGGATTGCAGGAGCGACTATGAGGATCTGTTAAGGGACTTGACAAGGCAGTTAAACCAGATTTCGACCTCCAAATCAGAAACCTACTTAGCTTCAGTGATCCAGGCTTTGGATGCTCCTTGGCCTAATATTCAAGCCAATGCCATATATTTCTCCTGCTGCATTCTCACACTTCTGGAAGACCAACGGCCATTAGCACAGTATAATTTGCAGGTGCTTTCAGTCCTTATGGATAAAATGAGTCGGTCCCCGGATGCAGTGGTGCGAGCAACGTGCTCATTTTGTTTGGGGCTTCTGCTCAGGTCCTCCTCCTGCGCCCATCTCTGGACTTCACATTCCGAACAACTTGAGAAGGAGGATGATTCTTCAAAACTGGGACATAAATACTACTATTAA

Network for GWHGAAEX009570

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12717.6	Cnd1	1451	1526	4.00E-06

Protein Sequence

>GWHPAAEX009570
PSCNFLLPFPIDQYLLPHPSGPTMAMVTATPTAAASGSPPAPEAVLALVSSLADESSIVRDASVSALKEIAPLNPLLVLDCCCSVTRGALRRLVNMACVFSVMACATRSMNERDVDLSLMTKLAKIAMTEIITSKELNTEWQKAAASLLVSIGSHVPDLMMEEIFFHIPGTYSALPAVVQILADFASAEALKFTPRLKEVLLRVLPILGSVKDVQRPIFANAFKCWCEAAWQYIGDFPSRPFLDSDVISFLNSVFELLLRDWAKSRDLKVCLSSVEALGKMVGLVSRSQLKAALPRLVPTILNLYCKDPEIALLASSSLHNILNACLLSENGPPLLDFEDLNNILSALLPVAYINNNNDDCPGFSKELKTYNEIQHCFLVIGSVYSEDLYSFLLGKCQTKDEPAVVGALSVIKHLLPRLLEAWHSKRNTLIEVVTSLLVGQSLGVRKAIAELLLVMASHCYFGGTSTELFMEYLVRHCAVLNDDGIYLKPSNEVIWKGNPFQPFYRKYEGNKSSANTIKLRAICEKGLLLLSITIPEMEHILWPFLLNVIIPKEYTGAVAIVCRCISELYKHRSSRGGSVLLNKFSSAQIPDPEDLFARLTVLLHDPLARGNLATQILTVLCRIGHLFPENLELFWQDEVPKLKAYISDPEDLKQNISYQETWDDMIINFISESLDVAQDTKWVISLGNAFERQYVMYVDDDEHAAMLHRCLGVLLQKVDDKIYVHEKIDWMYRHAKISVPANRLGLAKGMGLVSASHLDTVLEKLKTILDNVGRNRFQKLFSFFSFSSMIDDADDIHAALALMYGYAARYAPSTVIEARIDALVGTNMLSRLLHVQHHTSKQAVITSIELLGRAVINAAGMGICFPLKRRDQLLDYVITLMGTEESYSFADSSNELLHTQSFALSACTTLVIIEPKLPSETRNRVLKATLGFITLPVEPCDIIDPLINNLIILLCAILQTSGEDGKSRADQLLYILRKIDTYVLSAVEHERRRGCLAVHEMLLKFRALCSGGICGLGCLSSCTHNVQTENSKQKKFSTFASVYVLPCRDSLSIGERIITYIPRCADVSSEVRKVAVQIISLFFSISLSLPLLTAFGSDAHLESSYNALSSIEDVISMLRRDESIDQSEVFNRIVTSICILLTKDELVISLQMCTSAICDKIKQSSDGAIHAIIEFITTRGCELNEADVARTTQSLVLAASFVSDKHSRQEILQATSCLAEFTFSQVVFNEVLVTSARDISKKDVSRLRGGWPMHDAFNAFSQHAILSSVFLEYIVSSLDCSSVPKLDNDKGESINHSLDLVSDGVLLQAAVLALTAFFRGGGKTGKKAVEQNYSSVLCALVLQLGSCHGLVAGFGHQEYLRVLLTAFHSFCDCVGDLEMGKILARHGENDDREKWIDVIFDITSCISLKRPREIQPICMILSKALKRRQKLQREAAAAALSEYIRHSDGVPSLLEQLVEGMCLHVSDESPVVRRLCLRGLVQIPERQMCLYIPQVLGVIIALLEDHDESVQLTALQSLLEVLKSCPIDSLDPVFINLSIRLRNLQISMNANMRCNAFAAYGILSDCATTTIHHQAFLEQVHASFPRLLLHLHDEDLSVRQACRNTFKKLAPLIGAEGLPSLSSKHYFNSDCRSDYEDLLRDLTRQLNQISTSKSETYLASVIQALDAPWPNIQANAIYFSCCILTLLEDQRPLAQYNLQVLSVLMDKMSRSPDAVVRATCSFCLGLLLRSSSCAHLWTSHSEQLEKEDDSSKLGHKYYY

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.930
SRP064423	SRR2545915	Juvenile tuber	11.960
SRP108465	SRR5643513	five period of Gastrodia elata	7.370
	SRR5643514	five period of Gastrodia elata	7.590
	SRR5643515	five period of Gastrodia elata	7.560
	SRR5643524	five period of Gastrodia elata	7.590
	SRR5643525	five period of Gastrodia elata	10.040
	SRR5643528	five period of Gastrodia elata	9.480
	SRR5643658	five period of Gastrodia elata	12.300
	SRR5643659	five period of Gastrodia elata	7.260
	SRR5643660	five period of Gastrodia elata	7.710
	SRR5643661	five period of Gastrodia elata	7.090
	SRR5643662	five period of Gastrodia elata	7.000
	SRR5643663	five period of Gastrodia elata	7.990
	SRR5643664	five period of Gastrodia elata	8.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.850
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.770
SRP279888	Gastro	Gastrodia elata tuber	9.84
	Juven	Juvenile tuber	12.30
	Mother_Gastro	Mother tuber of Gastrodia elata	10.38
	Mother_Juven	Mother tuber of Juvenile	11.61