Detail information of GWHGAAEX009571/evm.TU.scaffold_25.184
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672116415|ref|XP_008781371.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Phoenix dactylifera] |
| Swissprot | tr|Q9SII7|PP159_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g17210 |
| trEMBL | tr|F6I0S5|F6I0S5_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB60541.1} |
| TAIR | AT2G17210 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 5841520 | 5844086 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009571
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 112 | 142 | 0.023 |
| PF01535.19 | PPR | 185 | 211 | 0.15 |
| PF01535.19 | PPR | 213 | 240 | 0.00013 |
| PF13041.5 | PPR_2 | 313 | 359 | 6.70E-09 |
| PF01535.19 | PPR | 389 | 413 | 0.00014 |
| PF01535.19 | PPR | 418 | 445 | 0.00017 |
| PF01535.19 | PPR | 492 | 517 | 0.71 |
| PF01535.19 | PPR | 520 | 545 | 0.0014 |
| PF01535.19 | PPR | 556 | 581 | 1.2 |
| PF01535.19 | PPR | 592 | 621 | 0.012 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.700 |
| SRR2545915 | Juvenile tuber | 0.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.160 |
| SRR5643514 | five period of Gastrodia elata | 1.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.610 | |
| SRR5643524 | five period of Gastrodia elata | 0.790 | |
| SRR5643525 | five period of Gastrodia elata | 0.110 | |
| SRR5643528 | five period of Gastrodia elata | 0.150 | |
| SRR5643658 | five period of Gastrodia elata | 0.020 | |
| SRR5643659 | five period of Gastrodia elata | 1.250 | |
| SRR5643660 | five period of Gastrodia elata | 0.740 | |
| SRR5643661 | five period of Gastrodia elata | 1.110 | |
| SRR5643662 | five period of Gastrodia elata | 1.170 | |
| SRR5643663 | five period of Gastrodia elata | 0.860 | |
| SRR5643664 | five period of Gastrodia elata | 0.910 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.010 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.78 |
| Juven | Juvenile tuber | 0.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.13 | |
| Mother_Juven | Mother tuber of Juvenile | 0.03 |