Detail information of GWHGAAEX009580/evm.TU.scaffold_25.194


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG22486.00E-1123'-5' exonuclease
nrgi|743805672|ref|XP_010927506.1|2.65E-156PREDICTED: small RNA degrading nuclease 1-like [Elaeis guineensis]
Swissprottr|Q8RXK2|SDN3_ARATH1.00E-114Small RNA degrading nuclease 3
trEMBLtr|M0U4H3|M0U4H3_MUSAM1.00E-148Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P29160_001}
TAIRAT3G501006.00E-112small RNA degrading nuclease 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003060276346049662+
Transcript Sequence

Network for GWHGAAEX009580

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14570REX1, REXO1, RNH70 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.130
SRR2545915Juvenile tuber17.210
SRP108465SRR5643513five period of Gastrodia elata7.860
SRR5643514five period of Gastrodia elata8.340
SRR5643515five period of Gastrodia elata6.970
SRR5643524five period of Gastrodia elata7.300
SRR5643525five period of Gastrodia elata3.350
SRR5643528five period of Gastrodia elata7.240
SRR5643658five period of Gastrodia elata2.710
SRR5643659five period of Gastrodia elata9.530
SRR5643660five period of Gastrodia elata8.430
SRR5643661five period of Gastrodia elata9.100
SRR5643662five period of Gastrodia elata9.550
SRR5643663five period of Gastrodia elata8.370
SRR5643664five period of Gastrodia elata7.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.440
SRR6049655Rhizomagastrodiae_C368-T10_good_19.370
SRR6049656Rhizomagastrodiae_C368-T07_good_110.350
SRR6049657Rhizomagastrodiae_C368-T07_good_110.750
SRR6049658Rhizomagastrodiae_C368-T04_good_111.090
SRR6049659Rhizomagastrodiae_C368-T04_good_110.750
SRR6049660Rhizomagastrodiae_C368-T01_good_113.180
SRR6049661Rhizomagastrodiae_C368-T04_good_111.570
SRR6049662Rhizomagastrodiae_C368-T01_good_112.630
SRR6049663Rhizomagastrodiae_C368-T01_good_112.230
SRR6049664Rhizomagastrodiae_C368-T10_good_111.390
SRR6049665Rhizomagastrodiae_C368-T10_good_111.390
SRP279888GastroGastrodia elata tuber 10.96
JuvenJuvenile tuber10.79
Mother_GastroMother tuber of Gastrodia elata 10.19
Mother_JuvenMother tuber of Juvenile 10.86