Detail information of GWHGAAEX009582/evm.TU.scaffold_25.196


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|218778744|ref|YP_002430062.1|2.00E-061,4-alpha-glucan-branching protein [Desulfatibacillum alkenivorans AK-01]
KOGKOG04703.00E-191,4-alpha-glucan branching enzyme/starch branching enzyme II
nrgi|743800907|ref|XP_010926178.1|2.07E-24PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X4 [Elaeis guineensis]
Swissprottr|D2WL32|GLGB3_ARATH4.00E-201,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic (Precursor)
trEMBLtr|V7BN73|V7BN73_PHAVU6.00E-24Uncharacterized protein {ECO:0000313|EMBL:ESW18505.1}
trEMBLtr|V7BN73|V7BN73_PHAVU7.00E-12Uncharacterized protein {ECO:0000313|EMBL:ESW18505.1}
TAIRAT3G204403.00E-19Alpha amylase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003061050436121178+
Transcript Sequence

Network for GWHGAAEX009582

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02806.17Alpha-amylase_C641412.40E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00700GBE1, glgB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500

Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0003824Molecular Functioncatalytic activity
GO:0043169Molecular Functioncation binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.560
SRR2545915Juvenile tuber0.630
SRP108465SRR5643513five period of Gastrodia elata0.330
SRR5643514five period of Gastrodia elata0.000
SRR5643515five period of Gastrodia elata0.000
SRR5643524five period of Gastrodia elata0.540
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.340
SRR5643658five period of Gastrodia elata0.260
SRR5643659five period of Gastrodia elata0.000
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.000
SRR5643662five period of Gastrodia elata0.000
SRR5643663five period of Gastrodia elata0.000
SRR5643664five period of Gastrodia elata0.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.000
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_10.000
SRR6049657Rhizomagastrodiae_C368-T07_good_10.000
SRR6049658Rhizomagastrodiae_C368-T04_good_10.340
SRR6049659Rhizomagastrodiae_C368-T04_good_10.400
SRR6049660Rhizomagastrodiae_C368-T01_good_10.000
SRR6049661Rhizomagastrodiae_C368-T04_good_10.000
SRR6049662Rhizomagastrodiae_C368-T01_good_10.280
SRR6049663Rhizomagastrodiae_C368-T01_good_10.000
SRR6049664Rhizomagastrodiae_C368-T10_good_10.000
SRR6049665Rhizomagastrodiae_C368-T10_good_10.000
SRP279888GastroGastrodia elata tuber 0.53
JuvenJuvenile tuber0.00
Mother_GastroMother tuber of Gastrodia elata 0.00
Mother_JuvenMother tuber of Juvenile 0.00