Gene detail

Detail information of GWHGAAEX009587/evm.TU.scaffold_25.202

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0998	Synaptic vesicle protein EHS-1 and related EH domain proteins
nr	gi\|672187394\|ref\|XP_008813330.1\|	PREDICTED: epidermal growth factor receptor substrate 15-like isoform X1 [Phoenix dactylifera]
trEMBL	tr\|U5D420\|U5D420_AMBTC	Uncharacterized protein {ECO:0000313\|EMBL:ERN17184.1}
TAIR	AT1G21630	Calcium-binding EF hand family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	6219099	6271523	-

Transcript Sequence
>GWHTAAEX009587 TTCCTTATTGAGTTCATTAATTGGCAACAATCAACCCAAAATGCCATTTGCAGCTATGCGTGCTTCGGCCATCGGTCGAAGATGATCAATCGTGAGCCTGACTACAGCTTTTGCGAGCATTAGCGGTTATTAGATCTCCAACCTCGCTCGGAGAAATCTCCTCGCCTGTGATTTTGTATTTTTTTTTTGAAATTCATAGAAATTCGTTAAATAAGGTCTCTTTCCTTTCAACCGGCGGTCTTCGCCGGATTTCAAGGCGGTCTCACCTACCGATCTTCAGCTTTACTGGCCACTATGGCGGCTGAACAAGGACAGGTTTCGAACGCGGACGCCTTCGATGCCTACTTCAGGAAAGCTGATTTGGACCATGATGGAAGGATCAGTGGAACAGAGGCGGTCGCTTTCTTTCAAGGATCCAACTTGCCCAAAGAAACCCTTGCCCTAGTATGGTCTTATGCTGCTGGAGGAAACAATTTTCTTGGGCGTATGGAGTTCTACAATGCTTTAAAACTTGTGACTGTTGCGCAAACTGGGCGACAACTAACGGCAGATATCGTGAAGGCAGCATTATATGGCCCAGCTGCAGCTAAAATTCCGGCACCGAAGATAAATCCTGCTTCTCAAGGACAGATAAATAGCATAGCCAGTTCTCCACAACCCAATCAAATGTTAATGCAGCCCAATCAGACTGGTTTGTTTAGGCCACCTGCTTCTCAGATAAATTCCATGGCTGTACCTTCACCTCAAGCAAGCAACTTAATGCCACAGTCATCTTCAACTGGTTTTGTGCAGCTGCCTACCTCTCAAATGACTTCTGCATCATTGCCACAATCTTCTCAGTTGGGTTTTATGAGGCCGCTTTCTTCTCAGATGAATTCCATGACTACCGTCTCACCCCAAACAAATAGTATGATGCATCAGTCACTTCAGACTGGCTTTTTCAGGCCTCCACCTCAAGCAAATAACATGCCAATGCAACCAGTTCATGCTGGCTTTATGAGTCCTTCTTCTTCTCAAATTACTAGTCTCATTGGACAACCGATGGCCATAACCTCACAAAACAATTTCATGAGGCCACCTCAAGCTTCACAAGTTGGTAGAAGTAGTGGGCCTCAAACCCTGGTTACTTCGAATTTTGTAGATAAAGATGGTTTTGGCATAGCACATTCAACACAGGATGCAAATTCTAAACCCCAAATTTATGATGCTATATCAACCACAACCCTATCAAGGTCCCTTGATACACTTTCAACTACAACTTCCAAGGATCCAAAAGTCTCGGCTTTTTTGGGGAATGGTTTTTCTTCTGATTCATTATTTGGAGGTGACGCTTTTTCAGCAACCCAGACTAAGCAGGATACTTCTGCTCCTATTTCATCCACAAGCAGTTTATCTGGCTCATTTAATTTGCCTCCCATAGCTCCTAGAAATTTTATCAACCCAGTTCAAGATGCTAATCTTCAAGGAGGCCTTCCGGTTGCAAATCAGTTGCAGAGAGCTCAACCTCTTGTTAAACAGGATCATCAAAACTCAATGCAGCACGCTTCAGCATTGCCCATTTACAATGTTCCAAGTGGTTCTGATATCAGCACTTCTCAAAATGAAATTTCATGGCCAAAAATTTCTCAATCTGACATTCGGAAATATACTAAAGTATTTTTGGAAGTTGATAAGGACAGAGATGGTAAAATTACAGGTCAAGAGGCGCGAAACCTGTTCTTGAGTTGGAAACTCCCTAGAGAGGTTCTGAGGCAAGTGTGGGATTTATCAGACCAGGATAATGATAGCATGCTTTCAATGAGGGAGTTTTGTATTTCCCTTTACTTGATGGAGCGCTATAGAGAAGGCCGTTCTCTTCCATCTGCTCTTCCTAATAGTGTGAAGTTCGATCAGACTTTGATACTTGCAACAGGGCAGCCTCCTACATATGGTGCTTCAGCTTGGCAGCCAAGACCTCTCTCATCTCAACAACCAATTTTGGAGCCTAGTTCTGCTGTGCCTCTCACCAGGGTGGAGGCTTCTACAATTGCTCTAACGCCTTCTCAGTCTGATGATGTTGTGCCACCAGTACAACAAAAATCAAGAGTGCCAGTATTGGAACAGAACATGGTGAACCAGCTCAGTGAAGACGAACAAAAAGCACTCAACTCGAAGTTACAAGAGGCAACTGATGCTGACAATAAGGTTCAAGAATTGGAGAAGGAGATTTTCAATTGTAAGCAGAAGACAGAAACTTACCGTAAACAGATGCAGGAACTTGTTCTTTATAAAAGCAGGTGTGACAGCAGATTAAATGAGACTATAGAAAGGACCGCTACTGACAAACGGGAGGTTGATCTGTTGGCAAGAAAGTACGAGGAAAAATATAAGCAGACGAAAGATGCAATTTCTATTACGAATGTGGATCAGGCTACTTTTCGAGATATTCAGGAAAGGAAGATGCAGTTATATAATGCAATTGTAAAAATGGAGCAAGGTGAAATGTCCGATGGTGTGCTCCAGGAACGAGCAGAGAAAATACAAACTGATTTGAATGAACTGGTAAAAACTTTGAATGATTGGTGTAAGGAGAGCGGGCTACGTGCAAAGCCCACATCACTAGTGGAACTTCCTTTTGGTTGGCAACCCGGCTTACAAGAAGGAGCTGCTGATTGGGATGAAAGCTGGGATAAGTTTGACAAAGATGATGGTTTTACAATTATCAAGGAGTTTACTTTTGAAGTGGAAAACATTATTGCTCCGGAGAAACAAAAGCCTGCCTTAGTCACGAGTGCCAAAGAACTACCGTCCATAACTACAAATGAAAATGATAAAACCACTCAAGATGATCCCTCACCGTTCACAAAAGTAGAGGAGAAGAATGAAAAGTCTTTGGCTACTGGAGAGCTTTTAACTGATTTGGAATCATCTAATGTGCATGGTGATGATGGCTCAGTAAGGAGCCCCCCTGATAGTCCTGGAAAATTTTCCTTGGAAAATCCATCTCAAGAATTTCAATCCATATATTCACCTCATGCCCATGAGAAAGAACATCACAGTGAACTTGATGGTCCTGAATCCACTATACCCGGGGAGAAGTTCACCGATGAGGCAACCTGGGGCGCAACTTTTGATTCTGATGACACTGACTCTCTCTGGGGCTTCAATCCGATCAGGACAAAGCAGCCCCTTCACGAAGAGAGCACGCAGTACTCGCCCAGTGCAGCCAGCATTTTTGGGAAAGAGAGGCCCCCGTTCTTCGATTCCGTTCCGAGCACCCCTCTCTACAGCTCCGTCTTATCTCCCAAATTCAATGAAGGGCAGGACGACCGGTCCTTCGATTCCTTCAGTCGATTCGATTCCTTCAGCACTCATGACTCCATTTTCCCTCCTGCCCGAACCCTAGCAAGGTTCGACACGATCGGAAGCACCGCCGATCCACCGCGCGACGCTTTTTCCCGATTCGATTCCTTCGGCGCCGACGCGCAGAAGGGGTTTGCGAGGTTCGATTCCATCCGAAGCACGGCCGATCCGTCCCGCGATGCATCATTCTCCAGATTCGACTCCTTCAGCAGCAGTGTTCATACGCAGAAGGAGTTTGCGAGGTTCGACTCGATCGGAAGCACTGCCGATCCGCCTCGAGATGCTTTCTCCAGATTCGATTCCTTCGGCGGCGCGGCGAATGCGCAGGGAGGATTTGCCAGGTTCGATTCCATCAAGAGCAGCGCAGGCGAGCACAATCATGGCTTCTCTTTCGATGATTCGGACCCCTTTGGTTCTGGTCCTTTTATAAGCTCAGACAGCCACGCCCCCAAGAAAAGCGCTGCTGATCAGTGGAGCTCCTTTTAGTTCCAGGCATACCTTTTTTTGTGTGGGCTTTTTCCTTCCCCTTCACATGTGTTTTTGTATTTGCCTTTTATCTATTTGATATATATAGCTTGATCGAGAAAGAAAGTTGGTTTCTATCGATTTTTTGTTTTTATTGGTTTTTTGCGTGCATATCACAGTTTCTTTTTATTTTCACTTGAACACTAAATTTTTAAATATTGCATAAATATAACAATTCCTTATATAAGTGTTGAATATGTATGTAATATTTAGAAATTTAGTATTTGGTATGAAAATAAAGAAGAAATTTGTGGTTTGAATGTAAAAGCCCTGTTTTGGATCTACATTTTTATCACATTTTATGAACAAATCTGTTTATTGTGAGTTTATGATTTGTAACTAAAAGAGTGCTTTTTGATTGTTTGAGACATCTTTAACTTGTGGGTTATGTGTATGGGTAATGCGATGCTCATCTTGAATTTTTGGGAGCCCAATTATTTTTCAT

Network for GWHGAAEX009587

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12763.6	EF-hand_4	441	527	2.30E-11

Protein Sequence

>GWHPAAEX009587
MAAEQGQVSNADAFDAYFRKADLDHDGRISGTEAVAFFQGSNLPKETLALVWSYAAGGNNFLGRMEFYNALKLVTVAQTGRQLTADIVKAALYGPAAAKIPAPKINPASQGQINSIASSPQPNQMLMQPNQTGLFRPPASQINSMAVPSPQASNLMPQSSSTGFVQLPTSQMTSASLPQSSQLGFMRPLSSQMNSMTTVSPQTNSMMHQSLQTGFFRPPPQANNMPMQPVHAGFMSPSSSQITSLIGQPMAITSQNNFMRPPQASQVGRSSGPQTLVTSNFVDKDGFGIAHSTQDANSKPQIYDAISTTTLSRSLDTLSTTTSKDPKVSAFLGNGFSSDSLFGGDAFSATQTKQDTSAPISSTSSLSGSFNLPPIAPRNFINPVQDANLQGGLPVANQLQRAQPLVKQDHQNSMQHASALPIYNVPSGSDISTSQNEISWPKISQSDIRKYTKVFLEVDKDRDGKITGQEARNLFLSWKLPREVLRQVWDLSDQDNDSMLSMREFCISLYLMERYREGRSLPSALPNSVKFDQTLILATGQPPTYGASAWQPRPLSSQQPILEPSSAVPLTRVEASTIALTPSQSDDVVPPVQQKSRVPVLEQNMVNQLSEDEQKALNSKLQEATDADNKVQELEKEIFNCKQKTETYRKQMQELVLYKSRCDSRLNETIERTATDKREVDLLARKYEEKYKQTKDAISITNVDQATFRDIQERKMQLYNAIVKMEQGEMSDGVLQERAEKIQTDLNELVKTLNDWCKESGLRAKPTSLVELPFGWQPGLQEGAADWDESWDKFDKDDGFTIIKEFTFEVENIIAPEKQKPALVTSAKELPSITTNENDKTTQDDPSPFTKVEEKNEKSLATGELLTDLESSNVHGDDGSVRSPPDSPGKFSLENPSQEFQSIYSPHAHEKEHHSELDGPESTIPGEKFTDEATWGATFDSDDTDSLWGFNPIRTKQPLHEESTQYSPSAASIFGKERPPFFDSVPSTPLYSSVLSPKFNEGQDDRSFDSFSRFDSFSTHDSIFPPARTLARFDTIGSTADPPRDAFSRFDSFGADAQKGFARFDSIRSTADPSRDASFSRFDSFSSSVHTQKEFARFDSIGSTADPPRDAFSRFDSFGGAANAQGGFARFDSIKSSAGEHNHGFSFDDSDPFGSGPFISSDSHAPKKSAADQWSSF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12472	EPS15	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005509	Molecular Function	calcium ion binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	66.780
SRP064423	SRR2545915	Juvenile tuber	56.050
SRP108465	SRR5643513	five period of Gastrodia elata	39.360
	SRR5643514	five period of Gastrodia elata	36.510
	SRR5643515	five period of Gastrodia elata	36.830
	SRR5643524	five period of Gastrodia elata	35.150
	SRR5643525	five period of Gastrodia elata	50.970
	SRR5643528	five period of Gastrodia elata	46.420
	SRR5643658	five period of Gastrodia elata	56.140
	SRR5643659	five period of Gastrodia elata	44.450
	SRR5643660	five period of Gastrodia elata	49.680
	SRR5643661	five period of Gastrodia elata	47.480
	SRR5643662	five period of Gastrodia elata	50.310
	SRR5643663	five period of Gastrodia elata	46.940
	SRR5643664	five period of Gastrodia elata	56.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	47.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	51.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	68.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	74.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	56.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	60.190
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	48.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.050
SRP279888	Gastro	Gastrodia elata tuber	68.81
	Juven	Juvenile tuber	67.37
	Mother_Gastro	Mother tuber of Gastrodia elata	45.22
	Mother_Juven	Mother tuber of Juvenile	52.18