Detail information of GWHGAAEX009594/evm.TU.scaffold_25.209
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672138368|ref|XP_008792938.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g14050, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|O23266|PP308_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g14050, mitochondrial (Precursor) |
| trEMBL | tr|A0A096TUN6|A0A096TUN6_MAIZE | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G447535_P01} |
| TAIR | AT4G14050 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 6424778 | 6426952 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009594
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 49 | 71 | 0.095 |
| PF01535.19 | PPR | 153 | 174 | 0.94 |
| PF01535.19 | PPR | 181 | 205 | 0.013 |
| PF01535.19 | PPR | 213 | 242 | 4.90E-05 |
| PF13041.5 | PPR_2 | 313 | 360 | 1.60E-09 |
| PF01535.19 | PPR | 388 | 412 | 0.0098 |
| PF14432.5 | DYW_deaminase | 486 | 610 | 3.70E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.360 |
| SRR2545915 | Juvenile tuber | 0.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.730 |
| SRR5643514 | five period of Gastrodia elata | 4.600 | |
| SRR5643515 | five period of Gastrodia elata | 3.410 | |
| SRR5643524 | five period of Gastrodia elata | 4.050 | |
| SRR5643525 | five period of Gastrodia elata | 0.550 | |
| SRR5643528 | five period of Gastrodia elata | 0.610 | |
| SRR5643658 | five period of Gastrodia elata | 0.490 | |
| SRR5643659 | five period of Gastrodia elata | 4.990 | |
| SRR5643660 | five period of Gastrodia elata | 4.500 | |
| SRR5643661 | five period of Gastrodia elata | 5.340 | |
| SRR5643662 | five period of Gastrodia elata | 4.910 | |
| SRR5643663 | five period of Gastrodia elata | 4.130 | |
| SRR5643664 | five period of Gastrodia elata | 3.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.690 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.480 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.72 |
| Juven | Juvenile tuber | 2.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.34 | |
| Mother_Juven | Mother tuber of Juvenile | 0.90 |