Gene detail

Detail information of GWHGAAEX009598/evm.TU.scaffold_25.213

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0413	Uncharacterized conserved protein related to condensin complex subunit 1
nr	gi\|743821333\|ref\|XP_010932007.1\|	PREDICTED: LOW QUALITY PROTEIN: condensin-2 complex subunit D3 [Elaeis guineensis]
trEMBL	tr\|A0A061EW85\|A0A061EW85_THECC	Condensin-2 complex subunit D3 isoform 1 {ECO:0000313\|EMBL:EOY06534.1}
TAIR	AT4G15890	binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	6489100	6524710	-

Transcript Sequence
>GWHTAAEX009598 ATGAATGAGGGCGAATTCGAAGAAACACTCTCCCGCTTCCTCTCCGACCTAGAATCTCTTCCCCAGGACGATCCCCTTCCCCAATCCTCCCTTCTAGATCTCGAATCCCTCCTTCCCTCCTGCTCTGCTGGAGCCAACACCAGCGCTTGCAGTGAAGATGCTGCTTTCCCTCTTTGGCACCAACTCGCCGCAGCAGGCCTTTCTCCTTCTTCTCTCCTTCGGCCTTTATCTGCAGCCATGGACCTCGCCTCGTCTCGCTCCTCCCTACTCGCCTCCCGCATCTACCTTTCCCTCCTACTCACCCCTTCCGCCCCCGTCCTCTCCCTCTTCTCCCCCCTCGCCTTCTTTTCCCTTCTCAGCTCTCTCCGCCAAGCTCTCAAACCCCTCCCAGCTCCGCCATCGCCAGACCGCCCAAGGAAACGCAAGCAAGGCCGCACTCGTCGGGACGATCAACGATTCGATGCGCTTTCGGATGTTGGAGATCTCCTGCCTTTCGTTCTTGGCCTCCTTGACTCCGTCCTTTCTCGCATCCGCCTCGACTCCTTCCCTGATGGTGTCAAGTCTCTAATTGACACCGTCATTGCCATTCTCACGTCATCCAGCACCGATTACCATCGGCTCTCTGGCGTCTGTTTCCAAATTCTCTACTCCGCCATTTCTCACCCCGAACACGGAGATCAAACTGCCATCACTGTCGAGGTTCTTAGAACTCTTGCGCGGGTTTTCCTTTCCTCTCCGCTGAAGTCAGCTCTGCGAGCTGCCACCATAAGTTTCACCGCCCGCAAAATCGCGCTGTTAGCGAGAGAGAATGCCAAAGTTAGGAAGGCTTTGATTTATTTTCCGAGATACCTCACTTTGAACGCTCCAGAGAGGGCTGAACCAAGAGCTGCGACGGTTGATGCCATATTGGAGGTTGTTAAGGCTTTTGAAAAGGACGATCAAATTGGTTTTTCCGAGTATGTGGTAAATATGACTCGAGGAAAGTGGCAGCTGCGACTTTTGGCTGCGGAACTGATTCTAGGTTTGTTAACTTCGTTGCCTGATCCTCTTGGAGTTCATAGATCGTTGCAGAGTTCAAGCTGCTGGGGAATGGAGTGCTTGAAAGCTTTAATGCAGCGTTGTTCGGATTCTATGGGAGGAGTTCGAGCTAGGGCGCTAACGAACATGGCTCAGGTGATTGAATTTTTATCCAAGGATGCGAAGAATTCTTCACGTTTGCAGGAAGGCGTAACTTTTGGAAATACTAACAAATTTAATGAGCTTCTTAGAAAAAGATGCTCCGATGAGAAAGCGGCTGTAAGGAAGGCTGCATTGCTTTTAATAACCAGATCTACTGCTTTGATTGGCCGACCGATTGATGAGCGGGTATTAAAGACAATAGGGTCTTCATGCTTTGACCCGCTTGTTAGCATCCGTAAAGCTGCTATGTCGGCTTTATCTGAGGTTTATAGAAAATTTTCCGATGAAGGAATAATCAACGAATGGCTTCATTCTGTACCTCGCTTGGTTGCAGACAATGAGACGAGCATACAAGAAGAATGTGAGAATTTGTTTCTCGAGTTGGTACTGGATCGAATATCAAGTGCTTCAAATGTCAGTGCTAATGATACAACACAAGACCTAAAATCAGTAATTCCTGAAGGAGTTTTAGCTTTGCTGGAAGGAATTTGTCATGGGGAAGTTCTTCCATATGTGAGGAAGATATGCTCTAGCCTTGGAAAGAAGAAGAAGCTTAAGTCTTCAATTGCCATTTCACTGGATAACATCATATCAATCTCAGAATCATTGTGTTTGAGAAATGGCATGCCTATTAAGAGGTGGACAGCCCCTATCGGAGCTTGGCAACTTCTTTCAGAGGTCTCTTATTTCACACCCAAGGCAGTTGAGTGGAAGTTTCTTCTCCATCATTGGAAGCTTTTTGACAAGGCAAAGGAAGGCAAAGGTGGCACACCTGATGGAGAAGAATCTAATTCCATCTCTTGGGCTAGAGATCGTGTGTCTCTTCTACAAACTATTTCAAGTGTTTCACTTCTGTTGCCCCCGGTGGATGCTTCTGACTTGGCTGCAGACTTGCTTAGACAAATTGATGAATTCAATATGCACTTTAGCGAGGTTGATGCCCATGTGAAAGCTCTCAAAACTCTATGCAAGCAAAAAGCTGTATCACTGGAAGATGGTGAAGAACTTATTGGAAAATGGGTCTATCAGTTACTCTCTGGGGCTCAGACTGTTATTGAAAATTGCATATCTAAACTATCTGAAACTGTGAAGCCTGATAGCTTTTTAACTCCATTAAATGGTAAGAGAAAAGGGAATGATAAGATGGCTTCATCCAAGTTGTTGTCACAAGCCATAATTGCAACTTTCACTGTTGGGTCATTGGTTATGATTTACCCTTCTGCTGAGCTGCATGGTATTGTCCCTTTGTTACATACAATGATAACATCAGGAAAGCCTGGAGCTGAAGCAACAAAACTTGTAAGCCTTACAGTCTCCATTAAAGAGTCAGCACCTTCTCTGTATGTTCAATCATGGGTGACCATGGGCAAAATTTGCCTTGTTGATGACAAACTGGCAAAGCGTTATATTCCACTTTTCGTGCAGGAACTCGAGAAGAGTGATTGTGCAGCCCTTCGCAATAATATTTTGGTTGTGATGGTTGATTTTTGTGTTCGATACACAGCTTTGGTTGACTGTTACATTCCAAAGATCACTACGACATTGCGCGATCCTTGTGAAGTTGTGAGAAGGCAGACTTTCATCTTGCTTTCAAGATTATTGCAGAGGGACTATGTGAAGTGGAGAGGAGCTCTATTCCTGAGGTTTTTATTGTCTCTTGTAGATGATTCTGATAAGATAAGAAATCTTGCAGATTATTTATTTGGGAACATCCTTAAAGTCAAGGCACCACTTCTTGCATATAACAGTTTTATAGAGGCTATATTTTTTCTTAATGGTTGTAATTCTTACTCTGGCCTAGGAGAGGCTCCGGAGAAAGGATCTCAACTTTTCTCATTAAGTGGCAAAGATGAAAAATCGAGATCACAGCGGATGCACATATATATATCTTTGCTAAAACAAATGGCTCCGGAGCATCTCTTGGCTACTTCAGCAAAGTTGTGTGCCGAAATCCTGGCAGCTGCTTCTGATGGTTTACTCAGCATTGACAACACTACTGGTCAATCTGTTGTGCAGGACACCCTGCACATCTTGGCTTGCAAAGAGATTCGCATTCAGTCGAGCAAAGGTTCTGACACAGCTGCCGAGATGGAAGATGACGGCGGCGGAGGAGATTCCGGCGGTGGAGCCGCCCTCCTGGCGGCCAAAGGACGAGCGGTGACTCAGGCGGCAAAGAAGAATCTCGTCCAGCACGCCGTCCCCATATTCATCGAGCTCAAACGGCTCCTGGAAAGCAAGAACAGCCCTCTAATGGGCAGCCTCATGGAGTGCCTCCGCGCTCTCCTTAAAGACTACAAGAACGAAATTGATGAAATCCTCGTGGCGGACAAGCAGCTCCAGAAAGAGCTGGCCTACGACATGGACAAGCACGAGGCCGCGAAGGCCAAATCTGCTGTCGCTGAGGCTACACAGCAGTGTCACGGGGTTACGTCTCCGGTCGGCAACATCGCCCTTGCGAAGCTGACGGATAAGCAATTGAGTGGCGGCAAGATTGGTTCGGCTGTGGCAGACGCTGTTGTGAGGGCCACCGTCAGGTCCGTGCTAAGGGAGGCTAACCGGAGCCCGGCCCTGCTGAAGAGCGTGCCCAGGGTTAAGAGCGCCACCGAAAATGCAGCTATAAGGGGGACCAGGCTGTTTGAGTCCGATGATGATGTTTAG

Network for GWHGAAEX009598

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12717.6	Cnd1	878	1053	7.30E-24

Protein Sequence

>GWHPAAEX009598
MNEGEFEETLSRFLSDLESLPQDDPLPQSSLLDLESLLPSCSAGANTSACSEDAAFPLWHQLAAAGLSPSSLLRPLSAAMDLASSRSSLLASRIYLSLLLTPSAPVLSLFSPLAFFSLLSSLRQALKPLPAPPSPDRPRKRKQGRTRRDDQRFDALSDVGDLLPFVLGLLDSVLSRIRLDSFPDGVKSLIDTVIAILTSSSTDYHRLSGVCFQILYSAISHPEHGDQTAITVEVLRTLARVFLSSPLKSALRAATISFTARKIALLARENAKVRKALIYFPRYLTLNAPERAEPRAATVDAILEVVKAFEKDDQIGFSEYVVNMTRGKWQLRLLAAELILGLLTSLPDPLGVHRSLQSSSCWGMECLKALMQRCSDSMGGVRARALTNMAQVIEFLSKDAKNSSRLQEGVTFGNTNKFNELLRKRCSDEKAAVRKAALLLITRSTALIGRPIDERVLKTIGSSCFDPLVSIRKAAMSALSEVYRKFSDEGIINEWLHSVPRLVADNETSIQEECENLFLELVLDRISSASNVSANDTTQDLKSVIPEGVLALLEGICHGEVLPYVRKICSSLGKKKKLKSSIAISLDNIISISESLCLRNGMPIKRWTAPIGAWQLLSEVSYFTPKAVEWKFLLHHWKLFDKAKEGKGGTPDGEESNSISWARDRVSLLQTISSVSLLLPPVDASDLAADLLRQIDEFNMHFSEVDAHVKALKTLCKQKAVSLEDGEELIGKWVYQLLSGAQTVIENCISKLSETVKPDSFLTPLNGKRKGNDKMASSKLLSQAIIATFTVGSLVMIYPSAELHGIVPLLHTMITSGKPGAEATKLVSLTVSIKESAPSLYVQSWVTMGKICLVDDKLAKRYIPLFVQELEKSDCAALRNNILVVMVDFCVRYTALVDCYIPKITTTLRDPCEVVRRQTFILLSRLLQRDYVKWRGALFLRFLLSLVDDSDKIRNLADYLFGNILKVKAPLLAYNSFIEAIFFLNGCNSYSGLGEAPEKGSQLFSLSGKDEKSRSQRMHIYISLLKQMAPEHLLATSAKLCAEILAAASDGLLSIDNTTGQSVVQDTLHILACKEIRIQSSKGSDTAAEMEDDGGGGDSGGGAALLAAKGRAVTQAAKKNLVQHAVPIFIELKRLLESKNSPLMGSLMECLRALLKDYKNEIDEILVADKQLQKELAYDMDKHEAAKAKSAVAEATQQCHGVTSPVGNIALAKLTDKQLSGGKIGSAVADAVVRATVRSVLREANRSPALLKSVPRVKSATENAAIRGTRLFESDDDV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.660
SRP064423	SRR2545915	Juvenile tuber	29.860
SRP108465	SRR5643513	five period of Gastrodia elata	19.700
	SRR5643514	five period of Gastrodia elata	19.560
	SRR5643515	five period of Gastrodia elata	18.050
	SRR5643524	five period of Gastrodia elata	18.870
	SRR5643525	five period of Gastrodia elata	24.200
	SRR5643528	five period of Gastrodia elata	15.470
	SRR5643658	five period of Gastrodia elata	18.330
	SRR5643659	five period of Gastrodia elata	22.040
	SRR5643660	five period of Gastrodia elata	21.150
	SRR5643661	five period of Gastrodia elata	21.350
	SRR5643662	five period of Gastrodia elata	21.840
	SRR5643663	five period of Gastrodia elata	21.350
	SRR5643664	five period of Gastrodia elata	23.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	34.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	51.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	52.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.850
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	43.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	25.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	25.290
SRP279888	Gastro	Gastrodia elata tuber	34.07
	Juven	Juvenile tuber	26.89
	Mother_Gastro	Mother tuber of Gastrodia elata	29.07
	Mother_Juven	Mother tuber of Juvenile	23.81