Detail information of GWHGAAEX009599/evm.TU.scaffold_25.214
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3046 | 4.00E-83 | Transcription factor, subunit of SRB subcomplex of RNA polymerase II |
| nr | gi|695023119|ref|XP_009398711.1| | 5.57E-99 | PREDICTED: mediator of RNA polymerase II transcription subunit 10b [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|F4HPA7|MD10B_ARATH | 2.00E-82 | Mediator of RNA polymerase II transcription subunit 10b |
| trEMBL | tr|M0SQE7|M0SQE7_MUSAM | 2.00E-99 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P19840_001} |
| TAIR | AT1G26660_2 | 4.00E-83 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 6528150 | 6538318 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009599
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF09748.8 | Med10 | 55 | 168 | 8.30E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0003712 | Molecular Function | transcription cofactor activity |
| GO:0016592 | Cellular Component | mediator complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 43.250 |
| SRR2545915 | Juvenile tuber | 47.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 56.390 |
| SRR5643514 | five period of Gastrodia elata | 80.470 | |
| SRR5643515 | five period of Gastrodia elata | 76.860 | |
| SRR5643524 | five period of Gastrodia elata | 79.580 | |
| SRR5643525 | five period of Gastrodia elata | 68.430 | |
| SRR5643528 | five period of Gastrodia elata | 74.680 | |
| SRR5643658 | five period of Gastrodia elata | 72.740 | |
| SRR5643659 | five period of Gastrodia elata | 60.800 | |
| SRR5643660 | five period of Gastrodia elata | 71.560 | |
| SRR5643661 | five period of Gastrodia elata | 64.420 | |
| SRR5643662 | five period of Gastrodia elata | 61.700 | |
| SRR5643663 | five period of Gastrodia elata | 58.390 | |
| SRR5643664 | five period of Gastrodia elata | 52.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 37.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 40.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 33.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 51.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 59.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 59.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 73.72 |
| Juven | Juvenile tuber | 96.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 105.01 | |
| Mother_Juven | Mother tuber of Juvenile | 90.34 |