Gene detail

Detail information of GWHGAAEX009600/evm.TU.scaffold_25.216

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0895	Ubiquitin-conjugating enzyme
nr	gi\|672112344\|ref\|XP_008805270.1\|	PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Phoenix dactylifera]
Swissprot	tr\|Q9ZVX1\|UBC23_ARATH	Probable ubiquitin-conjugating enzyme E2 23
trEMBL	tr\|W1NM68\|W1NM68_AMBTC	Uncharacterized protein {ECO:0000313\|EMBL:ERM96611.1}
TAIR	AT2G16920	ubiquitin-conjugating enzyme 23

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	6544927	6566041	-

Transcript Sequence
>GWHTAAEX009600 ATTGTTTTTTTAGCTAGCTTTCCAACGGAAGATCACGCTCACTAAGCCCAGCTCAAAACTTACACAGCCCATCGATAAAAGAGGGCTGAGCTGATCCGAAATGGGAGCAACACCGCCAAGAGCGTAGCAGCCGGGAAGGGATTCAGAAAGGCAGGGTAGCACGACCGAGCTGCTGTTCTCAACTCTTCTCCTCAACGAATCCCTTTTGTACCTATCCTCCCTTTGCGAGCTCTCATTGCCACCGAACGCCGGCGTTCGTCATCGTATGCGTAGGATTTCAGGGTTGGGATGCTGCTTAAGGATTGGTGAGAGGGAGGGCCAAAAGTATCTGAATGAGTACTTTTTCGGGGTTCACCTTCAGGAGAGCAGGGAGCTAGACATCTTTCATTCAGTTGTTTGTACGCTCAAGAATATCAGTTTAAAGAAGGAAACAAAGATATCGTGGTCATTCTAATATAACAAAAGACATGAGTAATCCAGTTGAACCTTCCATTAACTTTAATTGTGAATCTGAATCTGACTCTGAGCCTGTCGTGCATGAAGTACCAGCACATAGCTTACCAAACGAGAGAAGTCTTTACAGACACGATGTTGTCAGATGCATCAAGCATGAAGGTTCACTAGGAGTTGTCATGGAGGTGGCTGGTGATTCGGATTCGGAAGGAAGTGTCGCTGATGACAGTGATATTGATGATAACTCAAATGAGAATAATGCTTGTGATGGTGCAGATATAGATGTTACCAGCGGAAATGATGAGATGTGTGATAGGGACGAAAATAATGCTCTTCCGGATGGTCAAGTTAGAGTATTGTGGACAGATGGGTCAGAGTCTACAGACAATGTTAACGATATCACTGTTGTAGATAGGGGTTTCATGCATGGGGATGTTGTTGCTTCTGTTTCAGATCCAACGGGGCAATTGGGCCTTGTTGAGGATGTCAATATATCTGTTGATGTGCGAACTTCTGATGGAGAAATAATACATAATATTTCCACTAAAGATCTTAAACATATTAGAGAATTCACTATTGGGGATTATGTTGTCCTTGGCCCATGGCTAGGCCGCGTAGATGATGTTTTGGATAATGTGACTGTTTTGTTTGAAGATGGATCTATATGTAAGGTTATAAAAGCAGATCCATTGAGACTCAAAGCAGTTTCAAGACCTATCATTGATGATTCAAACTCTCCATTCTACCCAGGTCAGCGAGTAAGGGCTGTTTCTTCTTCAGTTTTCAAGTGCTCTAGATGGATGTCTGGCTTGTGGAAAGCCAACCGCCTTGAAGGCACTGTTGTTAAAGTTCAGACAGCATCTGTGATTGTTTATTGGATGACATCGGTGTACCTCGGTGTTGGCACTACTTTTGTTGATGTCCCAGTTGAAGAACAAAATCCAAAGGACCTAACTTTATTGTCTTGTTTTTCTTATGCAAATTGGCAGCTAGGCAACTGGTGTCTTCTTTCAGCATCAGTTGTGAATAAGACCTTGGATTCTGTAAACCTTCAAGAAACCATGGAGGGATGTGATGACAGATCCTTAAAAGATTGCTTAGTGGATGATTCTGTTGATTACAATTCAATTCAAAATACTGGAAGCACTGAAGAAGCCTTTGCGGTTTGTAACATAATTAATGGCAACCAGCCTTCTGAAATTGATAACACAGTTTTGGGAGTTAGTAATACTAATGAAGATAGTCATGCTATTAATGATGATGTAAAGGATCTATCAGTTACTGAGCAGATGAAAGATGGTTATGCCCCAAATTCTTTGGTATCAATAGATGAATGTAATTTGGAATTTCAGGATTGCGACTGCAATTTGGAGTTACAGAATAGCGACTGTAATTTTGATTCACAGGATATTGATTCCATGAACCATGTCAACATGCCCTGCAAAAATAGTCCCACCGAGTATAATGATGCAACTCCGGAGTTTGTCTCTTGCAGTATGTCATCATCCATTTCAAAGGAGCCTACTTACCGCAAGAAACTTCGTAAAGTTTTATTTAAAAGAGAGAGGAAGGCTTGTAGAAAAAACGAGTCTTTTGAAAGAGCTCTTTTAATTGTAAACACTGTAACAAAAGTTGATGTGGTATGGCAAGATGGAACGAGGGGATTTGGGTTAGAATCTACATCTTTAATTCCAATTCGTGCCCCGAGTGATCAGGAATTTTTTCCTGAACAGTACGTGGTAGAGAAGTCATCAAATGAAGAAGATGATTCTGTTGAACCTAATCGAGTTGGGATTATAAGAAGTGTTAATTCCAAGGAAAGAACTGTATGCGTTAGATGGTTTAAACCGGTGTCCAAACCAGAAGATCCTCGAGAATTTTCTTGTGACGAAGTTGTAAGTGTGTATGAACTTGACGAGCATCCTGATTATGACTATGGTTTTGGAGATGTTGTTGTTCGTCTATCTGCAGCATCTACTTCAGAGTCATATTCGGAAATTTCCTCAGAGATTTTGGAAGAACAGACTGATATTTTGGATTCGAAGACTGATGTAACTAAGAAGCGCTCAAAATTGAAAGGTGAAGCTTGGGAGAAATTAAAGTCGCTTTCCTGGGTAGGAAATATAATAGGCCTGCAAGATGGTGATATTGAGGTGGCATGGGCTGATGGGATGGTATCAAAAATTGGACCTCAAGCAGTTTTTGTTGTCGGCCGTGAAGATGATGCAGACTCATATGGAGGTGGAAGTGAAATTAGCGATGACAACGCAAGTTGGGAAACGATTAATGAAAATGAAATGGATACGCTTGATGATACTGAAAAGGAAGTTGATTCACAGAATGCCGACAATGTTGCTGTTCCTGAAAACACACAGGACAGTCCTCCAGAAGATACTGCTCCTGAAAGAACGGGGGCTCTTTCTGTGTCTCTTGCTGCCGTCAACTTCATCATCAGATTGGCCACAGGATTGTTTTCTCGGGATAAAAAGCATTCAGATTTATCAAATTCAAATCACAATGGTCTCAGTGAATCAGAATCTCAGGATATTCCAGAGTGTTTGGCCAATGCAGCTACTGTTGTAGATTCGGAGGCTTCTGAGTGCCAGAGTCACATGACAACAGTAGGAGACACCGAAAGGGTTTCACCTGCTCTGATCGAAAACTCAGCGTCAGATGCTTCTAGCAGAAGAGCAGATTCACGGGGCGGCATGCACAATATCAAACATTTTGACATCATCGAAGCCGCAGCGGACAATTATTTTCTTCTTAGTACTGGGCCGGTTAGTGGCGGAAAGAAATGGGCCAAGAAGATTCAGCAGGAATGGAGCGTCCTTGAGAAGAACTTGCCAGATGCTATTTATGTGAGAGCTTTTGAGGATCGAATGGACTTATTGAGAGTTGTGATAATGGGGGTTTCTGGAACTCCGTACCAAGATGGCCTTTTCTTTTTCGACTTCCATCTTCCCCCGGATTACCCTCAAGATCCTCCGGTGGCATACTATCATTCAGGTGGCCTGCGCCTGAACCCGAACCTGTATGTGGACGGGAAGGTGTGTCTGAGCCTACTGAACACGTGGGCGGGGAGAGGGAATGAGGTGTGGGATCCATCGTGCTCCAGCATCCTCCAGGTGCTGGTATCTCTGCAGGGCCTCGTGCTTAATTCCAAGCCCTATTTCAACGAGGCCGGGTACGAGAAGCAGGTCGGAACGGCGGAGGGGGAGAAGAATTCGGTGCCCTACAATGAGAACACCTACTTGCTGAATCTCAAGTCCATGCTCTATCTCATGCGGCGTCCTCCCACGCATTTCGACGGGTTTGTGAGGGAGCACTTCCGGCGGCGCGGGTGCTACATCATGAGAGCATGCGAGGCTTACATGGACGGGTGCTCGATAGGGACGCTCACCAAAGATGCTTGCCCGACAGAGAAGAGCAAGGAGCAGTCCTCCTCCGTCGGCTTCCGCCTCATGCTCTCCAAAATCCTCCCCCGCCTCATCTCCGCCCTCTCCCAACTCGGAGCCGTCGACGCCCTTCAATTCCAGCACCTCATCCAGGCCCAAACCCACCATCACCAATGATTGAAATTTCAAATATACCCTCATTCTCATTCCCGCCACCTCACACATATATATATATATATGTACACCTTATTTTTTTGGTTTATATTATTCTTATTTTCTTCTTCAATCATTTTATATTAGGCGTTGGGTGTTGCTTTGTGAGGTTGTGTAACTGTACTTAAGATAAAAATATGCAATGCCAAGGAAGATGAGCATAAGGCGCCATTCATGTTCTTGTTCATTAATGATAAATTTAACCCCTTCCCTTTTATGCGTTGAAACTTGTTCACTAATATACTTTTTTACTTTGAAAATGCATTAATTGAAATGCCAAAATTAC

Network for GWHGAAEX009600

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00179.25	UQ_con	933	1078	4.10E-23

Protein Sequence

>GWHPAAEX009600
MSNPVEPSINFNCESESDSEPVVHEVPAHSLPNERSLYRHDVVRCIKHEGSLGVVMEVAGDSDSEGSVADDSDIDDNSNENNACDGADIDVTSGNDEMCDRDENNALPDGQVRVLWTDGSESTDNVNDITVVDRGFMHGDVVASVSDPTGQLGLVEDVNISVDVRTSDGEIIHNISTKDLKHIREFTIGDYVVLGPWLGRVDDVLDNVTVLFEDGSICKVIKADPLRLKAVSRPIIDDSNSPFYPGQRVRAVSSSVFKCSRWMSGLWKANRLEGTVVKVQTASVIVYWMTSVYLGVGTTFVDVPVEEQNPKDLTLLSCFSYANWQLGNWCLLSASVVNKTLDSVNLQETMEGCDDRSLKDCLVDDSVDYNSIQNTGSTEEAFAVCNIINGNQPSEIDNTVLGVSNTNEDSHAINDDVKDLSVTEQMKDGYAPNSLVSIDECNLEFQDCDCNLELQNSDCNFDSQDIDSMNHVNMPCKNSPTEYNDATPEFVSCSMSSSISKEPTYRKKLRKVLFKRERKACRKNESFERALLIVNTVTKVDVVWQDGTRGFGLESTSLIPIRAPSDQEFFPEQYVVEKSSNEEDDSVEPNRVGIIRSVNSKERTVCVRWFKPVSKPEDPREFSCDEVVSVYELDEHPDYDYGFGDVVVRLSAASTSESYSEISSEILEEQTDILDSKTDVTKKRSKLKGEAWEKLKSLSWVGNIIGLQDGDIEVAWADGMVSKIGPQAVFVVGREDDADSYGGGSEISDDNASWETINENEMDTLDDTEKEVDSQNADNVAVPENTQDSPPEDTAPERTGALSVSLAAVNFIIRLATGLFSRDKKHSDLSNSNHNGLSESESQDIPECLANAATVVDSEASECQSHMTTVGDTERVSPALIENSASDASSRRADSRGGMHNIKHFDIIEAAADNYFLLSTGPVSGGKKWAKKIQQEWSVLEKNLPDAIYVRAFEDRMDLLRVVIMGVSGTPYQDGLFFFDFHLPPDYPQDPPVAYYHSGGLRLNPNLYVDGKVCLSLLNTWAGRGNEVWDPSCSSILQVLVSLQGLVLNSKPYFNEAGYEKQVGTAEGEKNSVPYNENTYLLNLKSMLYLMRRPPTHFDGFVREHFRRRGCYIMRACEAYMDGCSIGTLTKDACPTEKSKEQSSSVGFRLMLSKILPRLISALSQLGAVDALQFQHLIQAQTHHHQ

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	pathway	mapID
K10581	UBE2O	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.130
SRP064423	SRR2545915	Juvenile tuber	30.470
SRP108465	SRR5643513	five period of Gastrodia elata	24.200
	SRR5643514	five period of Gastrodia elata	25.300
	SRR5643515	five period of Gastrodia elata	21.410
	SRR5643524	five period of Gastrodia elata	23.110
	SRR5643525	five period of Gastrodia elata	28.010
	SRR5643528	five period of Gastrodia elata	24.190
	SRR5643658	five period of Gastrodia elata	33.700
	SRR5643659	five period of Gastrodia elata	23.520
	SRR5643660	five period of Gastrodia elata	24.370
	SRR5643661	five period of Gastrodia elata	22.180
	SRR5643662	five period of Gastrodia elata	24.500
	SRR5643663	five period of Gastrodia elata	25.080
	SRR5643664	five period of Gastrodia elata	27.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.850
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	30.190
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.530
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.590
SRP279888	Gastro	Gastrodia elata tuber	23.68
	Juven	Juvenile tuber	28.80
	Mother_Gastro	Mother tuber of Gastrodia elata	29.90
	Mother_Juven	Mother tuber of Juvenile	25.93