Gene detail

Detail information of GWHGAAEX009608/evm.TU.scaffold_25.226

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|310817728\|ref\|YP_003950086.1\|	3.00E-44	endonuclease/exonuclease/phosphatase domain-containing protein [Stigmatella aurantiaca DW4/3-1]
KOG	KOG2245	0	Poly(A) polymerase and related nucleotidyltransferases
nr	gi\|720035704\|ref\|XP_010267123.1\|	0	PREDICTED: poly(A) polymerase PAPalpha-like isoform X2 [Nelumbo nucifera]
Swissprot	tr\|Q0WLA9\|PAPS4_ARATH	0	Nuclear poly(A) polymerase 4 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|M0RI27\|M0RI27_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P14010_001}
TAIR	AT4G32850	0	nuclear poly(a) polymerase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000030	6817434	6844352	-

Transcript Sequence
>GWHTAAEX009608 CCGCCCGTCCCCATCTTCTCCTTGTTTCTCTCTCGTTCATACACTTGGATCGGTCTTCTCCTCTAATCGCACCGCTCCTTGTGTTTCTGTGGCTCTGATCAGTCGTCTCCTTTCTTTTTTAGTTTTTTTTCCCGCTTTGGATTTACGATTTTAGGTCGCCTTTTTAGGGTTCCAGAGTTCTCAGGATCTTGTGACGTTTGTTTGTATTTGGACGGTGAGGGTATATCGTTAGAAGATTCGAATGTCTTGTTCGTTTTTCTTGACGAGGGCGAGTATCGGTTTTATCTAAAAAGGGTTGATCTCGTGGCTTAAGTTAGCTCTACGTTATTAGAGACGCCACTTGAATTGTACCTCGTGCCCTGTTTTTTTAAAAGGAAACATTTTTATGATTTCGGTTTATTGATCATTGATTCTTCTAATCAAGCCTTGCGTCTGGTATGGTATATCTTTTAGTAGGGCGATAAAATATCTGCAGCCGTTTGACTGATTTTTTTCTATAAAATTAGAGGGTATCTTGTATTTTCTTCTGTTCTTTTGTTAGGCCTTTACCTTTCTAGCTTTTTTAAAACTTTTTTTGGGGCGAGTTCCGGGAGGAGATCCTAGCTTCTCTTACTCTAGGCTTCTTGTATTTGCTAGGATTTCAGGATGGGGAGTTCGGAGGCTGGCAATACTGTTGCACAAGTCTTTAGGCAGCATGGTGTGACAAACCCTATCTCTATTGCAGGGCCAACAGAATCAGATCTGCAGAGAACTGTGGAATTGGAGAAATTCTTGGTTGAGTCTGGCCTTCATGAGAGCAATGAAGAAGCTGCAAAGAGAGAGGAGGTTCTAGGATATTTAGATCTGATTGTAAAAAACTGGGTGAAGCAGTTAACAAGTCAACGAGGGTATACTGATCAAATGGTTCAAGAAGCAAATGCTGTCATATTTACATTTGGTTCTTATCGGTTAGGGGTTAATGGACCAGGAGCTGATATTGACACACTTTGCATTGGCCCTTCATATGTGAATCGGGAGGAGGATTTTTTCATCATTTTACATGAAATTTTATCTGAAAGAGAAGAAGTCACTGAACTTCAGCCTGTTCCAGATGCTCATGTTCCTGTAATGAAATTCAAGTTTAATGGGATATCTATTGACCTTTTGTATGCCAGCATTTCTCTTCTCGTAGTTCCAGAGGATTTGGACATCTCTCATGGTTCGGTGCTATATAATGTTGATGAACAGACAGTTCGGAGTCTTAATGGTTGCAGAGTAGCAGATCAAATACTTAGGCTTGTTCCCAATGTTGAGAGTTTCCGAACAACTCTCAGATGCTTAAAGCTATGGGCTAAGAGACGTGGTGTCTATTCAAATGTTACTGGATTTCTTGGGGGTGTTAATTGGGCTTTATTGGTAGCTCGTGTGTGCCAGTTATATCCAAATGCTGTGCCTAGTATGTTAGTATCTCGTTTCTTTAGAGTCTATACTCAGTGGCGATGGCCAAATCCTGTGATGCTGTGCTCCATAGAGGAAGATGAACTTGGTTTTCCTGTTTGGGATCCACGCAAGAATCCGAGAGACAGAACTCATCAGATGCCCATTATTACACCTGCATATCCATGCATGAACTCTAGCTACAACGTGTCAACCAGTACACTGCGAGTCATGAATGAGCAGTTTCAGTTTGGTAATAGAATCTGTGAGGAGATTGAGCTAAATAAGACCAGTTGGAAGCCATTGTTTGAACCGTACCATTTTTTTGAGTCGTATAAGAATTACCTTCAAGTTGACATTGTTGCAGCAGATTCAGATGACCTGCGTATATGGAGGGGCTGGGTGGAATCTCGATTGAGGCAGCTAACTCTCAAGATAGAGCGGGACACTTGCGGGATGTTACAATGCCACCCTTATCCAAATGAGTACATTGACAGTTCTCGTCGGTGTGCTCATTCCGCATTTTTCATGGGACTGCAAAGAAAGCAAGGGGTTGTAATTCAGGAAGGCCAACAATTTGATATCCGAGGAACGGTGGACGAATTCAAGCACTCTGTGAACATGTACATGTTTTGGAAACCCGGCATGGAAATTTATGTTTCCCATGTTCGAAGGAAGCAAATTCCTTCGTTTGTTTTTCCAGATGGGTACAAGCGTCCTCGACTTTCGAAGACGACAAATCTTCAAAATTCAGACAAAGCTAATGGCGGTGAGGATGTTCGTGATGCCGGCGGATCTTCAGAGAGAAGACTTAAGAGGAAAATGAGCGCCGAGGAGGAAGATATGCGATCAAGTCCGGTAAAACGTGCATCCGCCAGCCCTACTAAGATGTCTCCTTCACCTGATCGCTCTAGTAATAACAACATATCCTCAAAAGCTGAAGTTTCAAATCGAGTCACAGGTGGCATACCTCAGTCTTCTTCTTCTTCGATTTTTGGGTCAGTTGTTGTGACGCATTCATCTGCTTCATCTTCTAATTCTGATAAGACAAAGCTCCTTTCTCCCGATCAGTCTAGTGGCAGTCCATTTTCAAAGACTGAAGTTACCTGTGGGGTAACAGTTAGCACACCCCCATCTGCTGCCTTTAGCCCAGGATGGCAGATACCTGTTCTTTCTGGCCTTGAGTGGTCTTGCGGCAGGTCTGCGTCCCCTTGCATAAAACTAAATCAAGAATCATCAGAGGTTCAGTCTGAACTTTTGTTTGATCAAAGAATGAAAGCCTATAAAGATTCGGGTGACTTCTGCAGTGCTGTTACTGAAGATAATAAATTGAACGGCTCACAGCATCAGAGCATTGCAGAGACTGTCATTTTGGCTGTAAATGTGTCCCCTTTGCAAACCGAGCCCGCTGCTCTGCAAAATGGCTTGGTGGATGAGCTAGAGAAAAATGCTGGGCTAGGGGCAGTCATTAGTGCTCATGGAGGAGCGAACTCAGAATCCGTAGAGCAACCACCAGTGACAAGATTGAGCTTGACATCCACGGCATAGCTTGGCAGCCATTTGCAAGGGTAAGTTCTAAACTAGCTTTAATGTCTTCTATCTGGTCTATTTGAGTTGCTGCAGTTATTAAGAGCTAAATTAAAAAATGGATTGGAAGCTGAGATTATGAGCATACTGATCTGCATTAGAAACATTTTAGTTGGGGATTCTGACTGGGAGATTCAATGATGGTTATATTGTGCACTCTGTTATTGACTAATGTGACAAAAAAGGGTTAATTTATATATATGTGCTGTTTCTCACCCTTAAAAATTTTTTAAGGGGTATTCTAGTTGGGTGAGTGGCTACTAAAGTTTGTTTTGTTTAAGTTCAGGGGTTGTTGGCATCTCCTGTACTCCGATAATATGTATACTTTGAAAAATGGTAATGCAATGTGATGATTAAGGCCTAAAAACTGGCTTTTTATCTCAATTTTTTATTCGTAAGTTTGTTTATTTATTTTGGTTCAAATTATGATGCTTATTTTTGCGCAGATTAAAGTTGTTTTGGATGATGAACATATTTTAAGGACTTGGGTATTAGGTATTGAAAATTCTTTTATGTTAATCTAAATGGGTTGAACTAAAAATTTTCTAGTGTAAATGGAATTTTATAGTCGTTGAGGCTTTTTACTAATTGTATTATTGTATGAGGTGGAAATTATCGAACATGCCAGCATTTGGTGCACTAGGTTTTGTTCTCAGAAGAATTTAATTTGGTTATTCAGTGGCCTAAATTGTAGTGATTTTTGTGTTTTAAATTTTAACAGTGAGAATAGCAGTCTTTGTTTGGAAATGGCCTGCCCACAGTTTAAGAAATTAGACCGGCCTCTGAAATCCAGGCTAATACTTACATAGCTGTCTTTGAGCTCTAGCACCAGGAGATCCCTCGGTTGGATATTCAATGCTTGTCGTCTGCAAGCTTCTCCTGTTATTGCCTTCTATCAAATGTTCAAATAATTGGATGATCAGATGCAAATCGATGATCTAGATGACACCTTTTTCAAGAGAACATGTTTCAGATGCTTAACATGTACACTTGGAGGACTTTTAGATGTAAGAAGCGAATATCATGAGAGTGCATAATAAGCAAATTTACTAATAAATTGTTTACTTTTTATAAAAGCTTCATCGTCTGTAGAATCCAAA

Network for GWHGAAEX009608

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04928.16	PAP_central	18	362	6.00E-110
PF01909.22	NTP_transf_2	91	165	1.20E-08
PF04926.14	PAP_RNA-bind	365	423	2.20E-11
PF04926.14	PAP_RNA-bind	426	498	1.70E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14376	PAP	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0031123	Biological Process	RNA 3'-end processing
GO:0043631	Biological Process	RNA polyadenylation
GO:0004652	Molecular Function	polynucleotide adenylyltransferase activity
GO:0016779	Molecular Function	nucleotidyltransferase activity
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	148.060
SRP064423	SRR2545915	Juvenile tuber	121.490
SRP108465	SRR5643513	five period of Gastrodia elata	101.340
	SRR5643514	five period of Gastrodia elata	89.810
	SRR5643515	five period of Gastrodia elata	107.930
	SRR5643524	five period of Gastrodia elata	96.250
	SRR5643525	five period of Gastrodia elata	173.250
	SRR5643528	five period of Gastrodia elata	125.310
	SRR5643658	five period of Gastrodia elata	153.900
	SRR5643659	five period of Gastrodia elata	113.300
	SRR5643660	five period of Gastrodia elata	135.860
	SRR5643661	five period of Gastrodia elata	115.210
	SRR5643662	five period of Gastrodia elata	112.460
	SRR5643663	five period of Gastrodia elata	138.720
	SRR5643664	five period of Gastrodia elata	126.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	122.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	86.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	101.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	151.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	165.590
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	174.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	134.190
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	147.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	86.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	98.980
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	75.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	75.640
SRP279888	Gastro	Gastrodia elata tuber	157.45
	Juven	Juvenile tuber	170.93
	Mother_Gastro	Mother tuber of Gastrodia elata	150.34
	Mother_Juven	Mother tuber of Juvenile	186.40