Detail information of GWHGAAEX009609/evm.TU.scaffold_25.227
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284166310|ref|YP_003404589.1| | 2.00E-67 | pectinesterase [Haloterrigena turkmenica DSM 5511] |
| nr | gi|743756102|ref|XP_010915080.1| | 0 | PREDICTED: probable pectinesterase 53 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q8VYZ3|PME53_ARATH | 0 | Probable pectinesterase 53 (Precursor) |
| trEMBL | tr|M0TAD6|M0TAD6_MUSAM | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT5G19730 | 0 | Pectin lyase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000030 | 6887140 | 6908537 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009609
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01095.18 | Pectinesterase | 96 | 381 | 7.20E-73 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01051 | E3.1.1.11 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0030599 | Molecular Function | pectinesterase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.050 |
| SRR2545915 | Juvenile tuber | 0.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.170 |
| SRR5643514 | five period of Gastrodia elata | 0.210 | |
| SRR5643515 | five period of Gastrodia elata | 0.160 | |
| SRR5643524 | five period of Gastrodia elata | 0.420 | |
| SRR5643525 | five period of Gastrodia elata | 2.960 | |
| SRR5643528 | five period of Gastrodia elata | 3.600 | |
| SRR5643658 | five period of Gastrodia elata | 16.350 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.050 | |
| SRR5643661 | five period of Gastrodia elata | 0.100 | |
| SRR5643662 | five period of Gastrodia elata | 0.150 | |
| SRR5643663 | five period of Gastrodia elata | 0.190 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.240 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.790 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.37 |
| Juven | Juvenile tuber | 0.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.02 | |
| Mother_Juven | Mother tuber of Juvenile | 0.20 |