Detail information of GWHGAAEX009620/evm.TU.scaffold_250.10


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16035.00E-23Copper chaperone
nrgi|694371844|ref|XP_009363395.1|1.15E-36PREDICTED: putative late blight resistance protein homolog R1B-19 [Pyrus x bretschneideri]
Swissprottr|Q6L440|R1A3_SOLDE2.00E-07Putative late blight resistance protein homolog R1A-3
trEMBLtr|B9GKD3|B9GKD3_POPTR3.00E-36Uncharacterized protein {ECO:0000313|EMBL:EEE84313.1}
TAIRAT1G014905.00E-23Heavy metal transport/detoxification superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000250159616160685+
Transcript Sequence

Network for GWHGAAEX009620

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00403.25HMA9616.00E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0030001Biological Processmetal ion transport
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms48.630
SRR2545915Juvenile tuber15.430
SRP108465SRR5643513five period of Gastrodia elata110.880
SRR5643514five period of Gastrodia elata135.940
SRR5643515five period of Gastrodia elata112.060
SRR5643524five period of Gastrodia elata138.380
SRR5643525five period of Gastrodia elata46.520
SRR5643528five period of Gastrodia elata39.850
SRR5643658five period of Gastrodia elata121.600
SRR5643659five period of Gastrodia elata33.470
SRR5643660five period of Gastrodia elata39.650
SRR5643661five period of Gastrodia elata31.280
SRR5643662five period of Gastrodia elata82.630
SRR5643663five period of Gastrodia elata40.770
SRR5643664five period of Gastrodia elata186.550
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_160.680
SRR6049655Rhizomagastrodiae_C368-T10_good_1125.810
SRR6049656Rhizomagastrodiae_C368-T07_good_151.940
SRR6049657Rhizomagastrodiae_C368-T07_good_194.170
SRR6049658Rhizomagastrodiae_C368-T04_good_1122.720
SRR6049659Rhizomagastrodiae_C368-T04_good_1127.970
SRR6049660Rhizomagastrodiae_C368-T01_good_169.820
SRR6049661Rhizomagastrodiae_C368-T04_good_190.380
SRR6049662Rhizomagastrodiae_C368-T01_good_137.790
SRR6049663Rhizomagastrodiae_C368-T01_good_144.480
SRR6049664Rhizomagastrodiae_C368-T10_good_169.850
SRR6049665Rhizomagastrodiae_C368-T10_good_169.850
SRP279888GastroGastrodia elata tuber 107.45
JuvenJuvenile tuber85.11
Mother_GastroMother tuber of Gastrodia elata 239.40
Mother_JuvenMother tuber of Juvenile 235.39