Detail information of GWHGAAEX009630/evm.TU.scaffold_250.23
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427735203|ref|YP_007054747.1| | 5.00E-53 | WD40 repeat-containing protein [Rivularia sp. PCC 7116] |
| KOG | KOG0263 | 0 | Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) |
| nr | gi|743873578|ref|XP_010906861.1| | 0 | PREDICTED: transcription initiation factor TFIID subunit 5 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q6S7B0|TAF5_ARATH | 0 | Transcription initiation factor TFIID subunit 5 |
| trEMBL | tr|J3MGB1|J3MGB1_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB06G30550.1} |
| TAIR | AT5G25150 | 0 | TBP-associated factor 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000250 | 613513 | 656935 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009630
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04494.14 | TFIID_NTD2 | 48 | 176 | 5.40E-44 |
| PF00400.31 | WD40 | 332 | 363 | 0.0043 |
| PF00400.31 | WD40 | 401 | 433 | 3.10E-05 |
| PF00400.31 | WD40 | 440 | 475 | 6.70E-06 |
| PF00400.31 | WD40 | 480 | 517 | 8.60E-09 |
| PF00400.31 | WD40 | 522 | 559 | 3.10E-08 |
| PF00400.31 | WD40 | 563 | 601 | 7.60E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03130 | TAF5 | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 45.250 |
| SRR2545915 | Juvenile tuber | 42.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.870 |
| SRR5643514 | five period of Gastrodia elata | 23.200 | |
| SRR5643515 | five period of Gastrodia elata | 21.180 | |
| SRR5643524 | five period of Gastrodia elata | 21.020 | |
| SRR5643525 | five period of Gastrodia elata | 23.030 | |
| SRR5643528 | five period of Gastrodia elata | 17.590 | |
| SRR5643658 | five period of Gastrodia elata | 17.160 | |
| SRR5643659 | five period of Gastrodia elata | 32.240 | |
| SRR5643660 | five period of Gastrodia elata | 37.400 | |
| SRR5643661 | five period of Gastrodia elata | 34.170 | |
| SRR5643662 | five period of Gastrodia elata | 37.350 | |
| SRR5643663 | five period of Gastrodia elata | 36.650 | |
| SRR5643664 | five period of Gastrodia elata | 39.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 37.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 48.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 44.200 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 39.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 40.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 50.59 |
| Juven | Juvenile tuber | 42.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.42 | |
| Mother_Juven | Mother tuber of Juvenile | 27.95 |