Gene detail

Detail information of GWHGAAEX009633/evm.TU.scaffold_250.26

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2044	5'-3' exonuclease HKE1/RAT1
nr	gi\|719975134\|ref\|XP_010246744.1\|	PREDICTED: 5'-3' exoribonuclease 3-like isoform X1 [Nelumbo nucifera]
Swissprot	tr\|Q9FQ02\|XRN2_ARATH	5'-3' exoribonuclease 2
trEMBL	tr\|W9RHI7\|W9RHI7_9ROSA	5'-3' exoribonuclease 3 {ECO:0000313\|EMBL:EXB91256.1}
TAIR	AT5G42540	exoribonuclease 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000250	674613	721824	-

Transcript Sequence
>GWHTAAEX009633 ATGGGGATTCCCTCTTTTTACCGATGGCTTGTGGGAAGATATCCTAAAATAGTGGAAAACGCTATAGATGAAGGCGAAGGTTGTGCTCCAGATATGCCAAACCCTAATGGGGAATTCGACAACCTTTATCTTGATATGAACGGGATTATACATCCCTGCTTCCATCCTGATAATGAGCTTTTTCTACGAAGCACTTTTGATGAAGTCTTCATCGCCATCTTTGAGTACATTGACCATCTATTTCAGATTGTTCGGCCCAGAAAACTTCTTTACTTGGCAGTAGATGGAGTAGCTCCTAGGGCTAAAATGAATCAGCAGAGAGCCAGGAGATATCGAACGGCAAAAGATGCTGAGATTGCTGAAATTGAGGAGGAGAGATTAAGAAGGGAATTTGAGCGTGAAGGCAAAGTGCTTATTCCCAAGGAAGAGCATTCTGAAGTTTCTGATTCGAATGTCATTACTCCTGGAACTGTATTTATGCAGAAGCTGTCCAGATCTCTTGAGTATTATGTCCGTTTGAGACTAAATAATGACCCTTCTTGGAAATCTATTGCGGTTCTTATCTCAGATTCAAATGTTCCTGGTGAGGGAGAGCACAAAATTATGTCATTCATACGCTTTCTACGGAGGCTTCCAGGTTACGATCCAAATACTCGTCATTGCCTCTATGGCCTTGATGCTGACCTTATCATGCTTGCACTTTCAACACATGAGATACATTTCTGTATATTACGTGAGGACGTTCTCAAGCAGGATAATCAAGAAATTTGTTTGTCGACATTTGTAGTAAATTCGTCTCAGAAAGAGCTCGAGATGTTTAAATCAAGGCAGTGGTTCAAGAAGTTTGAAACTAGTACTATTAAAAAAGTCTATCGGAAGCCTTATCAGTTTCTGAATATCTGGAGATTAAGAGAATATCTTGAACTTGATATGAAACCTCAATCAGATACTGATATTGAAAGAGTTGTGGATGATTTTATTTTCATCTGTTTTTTAAGTGGAAATGATTTTCTTCCGAATCTCCCTACAATTGAAATTCACGAGTGTGGACTAGATTTGCTCATTGCTGTATATAAAATGATGTTCAAGTTTATGGGAGGCTATCTTATCAATTCAGGCAATATTAATAAAGAAAGTACCGCGTACATTAACTTTAAGGGGCTCAAAATTTTTTTAACGGAGGTTGGTTCATATGAGGATATGATTTTTGAAAAAAGATACATTCTTAGGAAGAGGAAGCTGAAAAGGCTGCAGCAAGAAAGAGAAAATGAAGAAAATGATGGAAATAATGCCGGGAACCAGGAGTTCAATGTTATGCCAGATAATTTCAATTGCATAATTGGAGCTTCAGATCATATCTCTGATTCCTTTTCAAAGAAATGCAATATTTCTACTTCAGCAGCAATCGAAGCTAACTGTTCTATCCAATCTGATGCCCTAGAGAACACTAGCGAATTTAAGCGAAGAATGAAGCAATTCCTCCTAGCCAAATCTGACCTGTACAAGAGTGAGGATGTTCTAGGCAATGACAAGGTTAAACTTGGTTGTCCTGGTTGGAGGGCTAGATACTACAAAATAAAGTTCTCTGCTGAAAATGCCAAAGAAATTGATGCCATTCGTAGAGACATTGTAAAGAACTATATTGAAGGCTTGTGCTGGGTTTTGCAATACTACTTTACTGGAATCTGTTCTTGGTCCTGGTATTATCCCTTTTACTACGGTCCCTTCGCGTCAGATTTCAAAGATCCCTTTTGTGAGGTATCTTTTACAGTTGGAAGACCCTTTAAACCTTTTGATCAACTTATGGCCGTTCTCCCACCAAGAAGTTCTCATGCACTCCCCAAAGCATATAAGAGTTTGATGAATGATGATGAGTCACCAATTGCTAATTTTTTCCCTACAGATTTTGTGGTGGACAATGATGGCAAACGTTTTACATGGCAGGGTGTTTGTAAGCTGCCATTTATTTATGAAGAAGCTCTTTTAGGGGCAACTAAGGGGCTTCTCAAGGAACTACAGGCTGATGAAGTGGAGAGGAACAGCGTGAAAAATGACAAGGTTTTTGTTATGGAATCAAATTCCCTTTCTACGATTATTAGTTTGCAGCACCGAGTTTCCGATAACCATCCAGTAGAAAATCAAATTTTTGATGTTTTTGGAGCGAGCTGTGGAATATCAGATTTATCATCTCATTCTGAAGGTTGTTCAGCTGTATCAAAATTTACTTCTCCTGTTTTGGGGATGGAGGATATATCGTGTGATAAATCTAGATGCATAACATTCACCAATCAGTTGCGCCAAGCATATATTCCTAGACTACTCGATGGCGCTAGAATCCCTGAAAAGACTATTACAGCTGCTGACATTGTTGAGAGAATGCTTTGGCATGAATATCATGGGCAGGCTCTTCGTGCATTACCACAGAGGCATGCGCATAAGCCCAACACCAATGAAACCTTGCCAGAACCGGACCATGATACATGGAAGTGCGCGGGAGTCGGCTGGAACCGTGTGGGACATGGAAAGACGCTTAAAGATGAGGACAAGCCATTGAATAAGCCCAACATGAATGAAACCTTGCCAGAACCGGACCATGATACATGGAAGTGCGCGGGAGTCGGCTGGAACCGTGTGGGACGTGGAAAGATGCTTAAAGACGAGGACAAGCCATGGAATAGGATTCATAAAGGGAATGCACCTAACACTTATAGACGGGGACAGTATTGTCCCCCTCCTTTTCAGCCAACAGCTGCTCCGCTGGGCACTTGGAGGCAGAGATCTGTGCCTCCTCCAGCTTCTTTGTCGGGTAGGTTCGAGAATTGGGGGCAAAGATCAATGCCTATGGTTTCTTCAAACGCTCGTGAATGGGGGCAACAATACAGGGCTCCTCCTCCTCCAGCTTATTCTATTCCGGCAGCACAATACCAAATCCAACAGCCGATGATTCAAAGGCCAGTTGCCGGAAGATACGACAATCGGATGGTTGAAAGGCCTGTGAATCAAAGGCCCGTGATGTCATACAATGGATTTCCGAGGAGTGTTAGGCAGAGACCAGAAGCACCCATGGTTTTTACTTCTGCAAGTGGAAGGGGAATGCTGCCCCCCGGTAGGCATCCAAATTTTTCATGGGTTCCAAGAAGTCCTGAAATCTCGGCATCAACAATGTCTGCAAGTAACAGATTTGAAGCTAATGCTACTGATGACTTCGAGCGCGGTTTGTTCGAAGGCAAAGCTAGAGCCATAAGTGATTTTGGGGGAGGAACGCCAGCGGCGATTATGGAGGAACCAGGCGGCGGCGATTCTTTGCAAACTCACAGGTCCTCTTCGTATAAAGGCAAGTCCTGCAAGGGGTGCCTCTACTTCTCCTCATCCCTCAAAGCCAACGCGCGCAGCCCTGTCTGCTTCGGCATCAGCCGAACCCTTCCCCAAGTGCCAAGTCACATTGTGGGGAAATCTGAGATGGAAGCGGCTGATGATGGACGCAGCTTGTCAGACTTCAAGTATGCTTGTCTTGGTTATTCTGTGTTTATGGATGACAAAAAAAGTGAGAAGGTGGAAGAGCAAGCGGAGTTGCCAATTTGTGCAGGCCTTGAGCTATTGGTAGATCGGCAAGTATCAAATGCTGGCAATGCTCCTGCACATATTTACAATAAGGAAGATGCTAGCCCTAGCCGCTCTCATCCTCGCCCCTACAAACCGACACAGGCTATGGGTGAAGAATTCATGTCCAGGAAAGTTCTCGAGAAATGCCGGGTTGGTGGCTTCCGGTGTGGTGAGGAATCTGAACCGTGCAGGAAACTATATCAAAGATACCATTGA

Network for GWHGAAEX009633

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03159.17	XRN_N	1	246	2.10E-95

Protein Sequence

>GWHPAAEX009633
MGIPSFYRWLVGRYPKIVENAIDEGEGCAPDMPNPNGEFDNLYLDMNGIIHPCFHPDNELFLRSTFDEVFIAIFEYIDHLFQIVRPRKLLYLAVDGVAPRAKMNQQRARRYRTAKDAEIAEIEEERLRREFEREGKVLIPKEEHSEVSDSNVITPGTVFMQKLSRSLEYYVRLRLNNDPSWKSIAVLISDSNVPGEGEHKIMSFIRFLRRLPGYDPNTRHCLYGLDADLIMLALSTHEIHFCILREDVLKQDNQEICLSTFVVNSSQKELEMFKSRQWFKKFETSTIKKVYRKPYQFLNIWRLREYLELDMKPQSDTDIERVVDDFIFICFLSGNDFLPNLPTIEIHECGLDLLIAVYKMMFKFMGGYLINSGNINKESTAYINFKGLKIFLTEVGSYEDMIFEKRYILRKRKLKRLQQERENEENDGNNAGNQEFNVMPDNFNCIIGASDHISDSFSKKCNISTSAAIEANCSIQSDALENTSEFKRRMKQFLLAKSDLYKSEDVLGNDKVKLGCPGWRARYYKIKFSAENAKEIDAIRRDIVKNYIEGLCWVLQYYFTGICSWSWYYPFYYGPFASDFKDPFCEVSFTVGRPFKPFDQLMAVLPPRSSHALPKAYKSLMNDDESPIANFFPTDFVVDNDGKRFTWQGVCKLPFIYEEALLGATKGLLKELQADEVERNSVKNDKVFVMESNSLSTIISLQHRVSDNHPVENQIFDVFGASCGISDLSSHSEGCSAVSKFTSPVLGMEDISCDKSRCITFTNQLRQAYIPRLLDGARIPEKTITAADIVERMLWHEYHGQALRALPQRHAHKPNTNETLPEPDHDTWKCAGVGWNRVGHGKTLKDEDKPLNKPNMNETLPEPDHDTWKCAGVGWNRVGRGKMLKDEDKPWNRIHKGNAPNTYRRGQYCPPPFQPTAAPLGTWRQRSVPPPASLSGRFENWGQRSMPMVSSNAREWGQQYRAPPPPAYSIPAAQYQIQQPMIQRPVAGRYDNRMVERPVNQRPVMSYNGFPRSVRQRPEAPMVFTSASGRGMLPPGRHPNFSWVPRSPEISASTMSASNRFEANATDDFERGLFEGKARAISDFGGGTPAAIMEEPGGGDSLQTHRSSSYKGKSCKGCLYFSSSLKANARSPVCFGISRTLPQVPSHIVGKSEMEAADDGRSLSDFKYACLGYSVFMDDKKSEKVEEQAELPICAGLELLVDRQVSNAGNAPAHIYNKEDASPSRSHPRPYKPTQAMGEEFMSRKVLEKCRVGGFRCGEESEPCRKLYQRYH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12619	XRN2, RAT1	Ribosome biogenesis in eukaryotes	map03008
K12619	XRN2, RAT1	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0004527	Molecular Function	exonuclease activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	58.260
SRP064423	SRR2545915	Juvenile tuber	78.000
SRP108465	SRR5643513	five period of Gastrodia elata	40.000
	SRR5643514	five period of Gastrodia elata	43.500
	SRR5643515	five period of Gastrodia elata	37.260
	SRR5643524	five period of Gastrodia elata	41.040
	SRR5643525	five period of Gastrodia elata	44.680
	SRR5643528	five period of Gastrodia elata	29.710
	SRR5643658	five period of Gastrodia elata	44.760
	SRR5643659	five period of Gastrodia elata	53.040
	SRR5643660	five period of Gastrodia elata	54.280
	SRR5643661	five period of Gastrodia elata	50.350
	SRR5643662	five period of Gastrodia elata	54.220
	SRR5643663	five period of Gastrodia elata	60.240
	SRR5643664	five period of Gastrodia elata	59.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	36.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	43.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.080
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.400
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.260
SRP279888	Gastro	Gastrodia elata tuber	44.91
	Juven	Juvenile tuber	55.42
	Mother_Gastro	Mother tuber of Gastrodia elata	37.43
	Mother_Juven	Mother tuber of Juvenile	43.31