Gene detail

Detail information of GWHGAAEX009640/evm.TU.scaffold_251.5

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2063	Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3
nr	gi\|672114195\|ref\|XP_008775839.1\|	PREDICTED: LOW QUALITY PROTEIN: vam6/Vps39-like protein [Phoenix dactylifera]
trEMBL	tr\|M0TGL1\|M0TGL1_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P11230_001}
TAIR	AT4G36630	Vacuolar sorting protein 39

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000261	85979	137587	-

Transcript Sequence
>GWHTAAEX009640 GCTGGATTTGCACTGCATTCAAAACGGTCCCGTGCAGAGTTAGTTGTTCCTGTGTGTGGAAGGGAAGGGAAAGGCGGCATCGGACCATCGATGCATTCTGCAGGGAAGCAACGGAGGGCCGGAGTGTGAAAGCACGGACGCAATGGTGCACAGTGCCTACGATTTGGTAGAGCTTATAAAGGGCTGCAACGTAAAGATCGAGAGCGTTGCTTCGTTTGGAACAAAGATCCTCCTGGGTTGCTCCGACGGCTCACTTCGGATCTTCGCACCGACATCATCCTTTTCGACCGCTGCTGTGCTTTCCAGTGGGGATGAGGGGATATCGCCTCTCGATTCTGATATCAAGCGAGAATTGTACGCGCAGGAGAGGGCGATGTCGGGGTTCTGGAAGAGGGCTCCGGTGGCTATGGAGGTGTGCCGTTCGAGAGATCTTCTGTTGTCCCTCTCGGAGTGGATTGCTTTCCACCGTCTCCCCAATTTGGAGACAGTTGTCGCCATAGCTAAGACTAAAGGTGCTAATGTATATAGCTGGGACGATCGGAGGGGCTTCCTTTGCGTTGGCCGGCAGAAGAGGGTTGGCATCTATCGGTTGGATGGTGGGCGTGAATTTGTGGAGGTCAAGGAGTTCGGTGTGCATGATCATGTGAAGTCTATGGCATGGTGTGGTGAAAACATTTGCTTGGGAATTGGGAAGGAATATGTAATACTAAACAGTGCAACTGGTGCATCATCTAAAGTATTCTCTTCTGGGAGGAGTGCTCCCTTAGTTGTTCCTCTCTCCTCTGGTGAACTTATCCTAGGAAAGGATGACATTGGAGTTTTTGTTGACCAAAATGGGAAGCTCTTACAAGATGGAAGGATATGTTGGTCTGAGGCCCCTTGCTCTATTGTCATCCACAAGCAATACGGATTGGCTCGCCTGCCAAGGTATGTTGAGATACGCTCTCTTCATGCTCCATACCCTTTGGTTCAGACAATTGTGCTCAGGGACGTTCATCTACTCCAGCAAAGTAATAGTTGTGCGATTGCTGTTGTAGGAAGTTCAATTTATGGTCTCTTGCCTGTTCCTATTGGTGCCCAGATTGTGCAGTTAACAGCATGTGGGAATTTTGAAGAGGCATTAGCTTTGTGCAAACTACTCCCACTAGAGGATTCTAACCTTCGAGCAGCAAAAGAAGCCTCCATACATATAAGGTATGGGCATTATCTATTTGACAATGGGAATTATGAGGAGTCCATGGAACATTTCTTGTCTTCCCAAGTTGATGTAACTTTTGTGTTATCTTTATACCCTTTGATTACTCTTCCAAAGGTTCTCACCATTGGTGAACCTGAGAAGTTCCAAGAATCAGCAGATGCTTCTTACCTATCAAGGGCACCTTCTGATATATCAGATGACATGGAATCATCATTGCCATCGCACTTCTATGAATCTGATGAAAAACCAGCAGTCGAGGATAAGAAAATGAGTTATAACGCTATCATAGCACTAGCAAAGTATCTGCAGAGGAAAAGATATAGTGTCATTGAAAGGGCAACGGCTGAACTAACTGAAGAAGTTGTATCTGATGCGGTGCAGGGCAGCTTGTCATCTACTGAACCATATGGATCCAAGAGTTCGATCAAGAAACGAGGACACCCTCATATCAGCTCTATTGGAAGGGAGTTGGCAACTATACTCGACACAGCACTCATTCAGGCACTGCTTCTTACTGGGCAAACTTTGGGAGCATTAGAGCTATTAAAAGGTCCTAACTACTGTGATTTAAAGATTTGTGAGGAACTTCTTAAAGAAAGGAGTGATTTTAGAGTGTTGTTAGAGCTTTACAAATGCAGTGGAATGCATCATGAAGCACTCAAACTCCTCCATCGACTTGTTGAGGACTCAAATTCTGGCATTACGACTTCCGAATCTCATGAATTTAAGCCATCTATGATTATTGATTATCTCAAACCTCTTTGTAGAACGGACCCCATGCTTGTCTTGGAATACTCTACGTTTGTCCTAGAAAAATGTCCAACAGAGACTATTGAGCTTTTTCTTGCTGGAAATGTTCCCGCTGATTTGGTCAACTCATACTTAAAGCAGCGTGCACCTAACTTGCAATCTACATATTTAGAACTCATGCTTTCAATGAGTGAGAATGGGGTCAATACAAATCTGCAGAGCGAACTGGTTCAAATATACCTTTCAGAAGTTATAGACTGGTACAAAGATTTGAAAGAGCAGCATAATTGGAATGAGAAAATTTACTCATCTACACGGAAAAAGCTATTGTCGTCTCTAGATAGTATGCCTTCTTATAATGCAGAGAGTCTTTTGAAGCGCCTTCCATCTGAAGCTCTTTTTGAGGAGCGTGCCATTTTACTTGGCATGCTCAATCAACACCAACTTGCATTGTCTCTCTATATTCATAAGCTTTACTTACCCGAACTTGCACTCAAATACTGTGACCGCATTTACGAGTCTGGACTGCCACAGCCTTCAAATTTTAATTTCAACATTTATCTCACTCTTCTGCAAATTTACCTTAATCCAAAGAGGTCGACCAAAGAATTTGATCAGAAGGCTTACCTAACAAATTTACAAAACTCTAACCTTCAGAAAGTAAGCTTAACTAAAGCTAAAGTGGGTCGAGTAGCTAAAAAGATTGCTTCAATTGAGGGAGCAGAAGATATGCGTATCAGTCCAAGCAGTACTGATAGTGGCCGTAGTGATGTGGATGCTGAAGAAGCAAGTGAAGAAAGTGGTCCTATAATGTTGAACGAGGCACTGGAGTTGTTGAGCCAGAGATGGGACAGGATCAATGGCGCTCAAGCCCTCAAATTGTTGCCTAGGGACACGAAGCTTCAGAATTTGCGTGCTTTCCTTGAGCCTCTCTTAAGGAAGTCTAGTGAAGGTCGCAGGAATTTCTCTGTTGTCAAGAACTTAAGATACAGTGAGAATTTGCAGGTTAAGGAAGAGCTGTACAATAATCGTCATACAGCTGTTAAAATTGATGGTGATAGTACATGTGCTCTTTGCCACAAGCGAATAGGTACTAGTGTGTTCGCTGTGTACCCAAATGGCAAGACTCTTGTACATTTTGTTTGCTTTAGAGACTCACAAACCATCAAAACTGTGAGGGGATCTGAAAATCCAAAGCTCAAGCAGTCATTTTCCAACCCAATTAGGCGATTCAGTATTCTCTCCCCCAAATGAACCGTTTTTCGTTATATGGCTTTTTATTATGGAAGCAAAACCTGCTGCATGCTGCATTGAAGTATTCACTCTGTGCACTTATGTGCCGATCATCAAAAATCACATTAGCATGTTGTATAAACTGATTGTATATGTTTCTAATTTAT

Network for GWHGAAEX009640

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00780.21	CNH	115	290	9.20E-17
PF10366.8	Vps39_1	513	622	1.70E-25
PF10367.8	Vps39_2	878	986	3.50E-33

Protein Sequence

>GWHPAAEX009640
MVHSAYDLVELIKGCNVKIESVASFGTKILLGCSDGSLRIFAPTSSFSTAAVLSSGDEGISPLDSDIKRELYAQERAMSGFWKRAPVAMEVCRSRDLLLSLSEWIAFHRLPNLETVVAIAKTKGANVYSWDDRRGFLCVGRQKRVGIYRLDGGREFVEVKEFGVHDHVKSMAWCGENICLGIGKEYVILNSATGASSKVFSSGRSAPLVVPLSSGELILGKDDIGVFVDQNGKLLQDGRICWSEAPCSIVIHKQYGLARLPRYVEIRSLHAPYPLVQTIVLRDVHLLQQSNSCAIAVVGSSIYGLLPVPIGAQIVQLTACGNFEEALALCKLLPLEDSNLRAAKEASIHIRYGHYLFDNGNYEESMEHFLSSQVDVTFVLSLYPLITLPKVLTIGEPEKFQESADASYLSRAPSDISDDMESSLPSHFYESDEKPAVEDKKMSYNAIIALAKYLQRKRYSVIERATAELTEEVVSDAVQGSLSSTEPYGSKSSIKKRGHPHISSIGRELATILDTALIQALLLTGQTLGALELLKGPNYCDLKICEELLKERSDFRVLLELYKCSGMHHEALKLLHRLVEDSNSGITTSESHEFKPSMIIDYLKPLCRTDPMLVLEYSTFVLEKCPTETIELFLAGNVPADLVNSYLKQRAPNLQSTYLELMLSMSENGVNTNLQSELVQIYLSEVIDWYKDLKEQHNWNEKIYSSTRKKLLSSLDSMPSYNAESLLKRLPSEALFEERAILLGMLNQHQLALSLYIHKLYLPELALKYCDRIYESGLPQPSNFNFNIYLTLLQIYLNPKRSTKEFDQKAYLTNLQNSNLQKVSLTKAKVGRVAKKIASIEGAEDMRISPSSTDSGRSDVDAEEASEESGPIMLNEALELLSQRWDRINGAQALKLLPRDTKLQNLRAFLEPLLRKSSEGRRNFSVVKNLRYSENLQVKEELYNNRHTAVKIDGDSTCALCHKRIGTSVFAVYPNGKTLVHFVCFRDSQTIKTVRGSENPKLKQSFSNPIRRFSILSPK

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20183	VPS39, VAM6	Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.230
SRP064423	SRR2545915	Juvenile tuber	27.220
SRP108465	SRR5643513	five period of Gastrodia elata	21.300
	SRR5643514	five period of Gastrodia elata	23.260
	SRR5643515	five period of Gastrodia elata	18.570
	SRR5643524	five period of Gastrodia elata	23.310
	SRR5643525	five period of Gastrodia elata	25.890
	SRR5643528	five period of Gastrodia elata	29.250
	SRR5643658	five period of Gastrodia elata	39.030
	SRR5643659	five period of Gastrodia elata	9.200
	SRR5643660	five period of Gastrodia elata	10.330
	SRR5643661	five period of Gastrodia elata	8.040
	SRR5643662	five period of Gastrodia elata	7.000
	SRR5643663	five period of Gastrodia elata	8.160
	SRR5643664	five period of Gastrodia elata	9.020
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.240
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.670
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.870
SRP279888	Gastro	Gastrodia elata tuber	8.27
	Juven	Juvenile tuber	22.29
	Mother_Gastro	Mother tuber of Gastrodia elata	15.37
	Mother_Juven	Mother tuber of Juvenile	27.96