Gene detail

Detail information of GWHGAAEX009654/evm.TU.scaffold_251.23

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2140	Uncharacterized conserved protein
nr	gi\|743786463\|ref\|XP_010922178.1\|	PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Elaeis guineensis]
trEMBL	tr\|M0U5H6\|M0U5H6_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP01640_001}
TAIR	AT1G80930	MIF4G domain-containing protein / MA3 domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000261	278666	287700	+

Transcript Sequence
>GWHTAAEX009654 GAATGTTTGTAATGCATGATGTCACAATCGTAATAGATGATTTAGATTAAGTTTCTTAGCAGATTTTGAGCAAAATTCCATCTCATAATCTGCTGAATAATATATGTGCCAACGAAAATTCCTATCCTCCTTCAAAATGAGGATAAATTAGAAGATCACATCATTTTTTCTTAAAATTGTGGAATCATATTTTCTTTATATTAGCGATTAAAAAATTATAGAATTTATAGCTCATGTGATAAACACTTAATTATCCTTACGAATGATACAGAGATTTATTTTACTCATCTTAATCACGAACAAATTCTCAAAGACCTATAGTTAGGAGGAGTGTTGAAGGCCGGGAGCGATCTAGCGCCCTTTAGAGTTCAGACACTTGTGCGACGCTAGGGTTTGCTTCGTCGGGATCATCCACGCGAGAAGGCTATCGAGAAGGGTTTGCATAAGGGCTGGTCAGAGGGTCCAAACCGTCCATACTAGGGCTGAGGGAAGGACCATCGGATGGGGAAGACGAAGCGTATTGCGGAGGAGAGATTTAAGGACCAAAGATCGGAGATTTCCTTAGATAGAGATTGGAAAACAAAAGGGGAAAAGGACGAGAAGCCCCAGCTAGCGGTGCAGCAGATGGAGGATGCGGTTTCTATCAAAACGGGCGGTATATACATCCCGCCCCATAGGATGGCTCAGATGATGAGGGACGTGCAGGATAAGACCAGCGAATCCTACCAACGGCTGAGCTGGGATGCTCTGAGAAAGAGTATAAATGGTCTCGTGAACAAGGTGAACGCTACGAACATCAAGAACATCATCCCCGAGCTCTTTTCTGAGAACCTCATCAGGGGAAGGGGCCTCTTTTGCCGGTCCTGTATGAAATCTCAGATGGCGTCTCCTGGCTTCACGGATGTTTTTGCGGCTTTGGTTGCGGTTGTGAACACCAAGTTTCCAGAGGTGGGAAAGCTCCTTCTGAAGAGGGTTCTCTTGCAGTTCAAGAGGGCTTTTGCGAGGAATGATAAGCCCCAATTGCTTGCTGCAACTAAATTCATAGCGCATCTTGTGAATCAGCAAGTGGCGCATGAAGTCGTTGCATTGGAGCTTCTTACAATTTTATTGGTAAACCCTACGGACGATAGTGTTGAGGTTGCTGTTGGTTTTGTTAAAGAATGCGGAGCATTGCTGCAGGACCTTGTTCCTCAAGGTCTTCATGGTGTTTTTGAAAGATTCCGTGGTATACTCCATGAAGGAGAAATTGACAAGCGTGTACAATTTTTGATAGAGGGTCTTTTTGCTATAAGAAAGGCAAAGTTTCAGGGGTTTCCAGCTATCCGTGCAGAACTGGATCTTGTGGAACTGGAGGATCAATTTACACATGAGATGTCCTTTGAGGATGATATAGATCCTGATACCAGTCTAGATGTTTTCAAGTTTAATACACAATTTCTTGAAGATGAGAAAGCTTATGAGGATCTCAAGAAAAGTTTTCTCGGGGAAGAGTCTACTGATGATGAAGCAGGTTCTGAAGAAGAAGGCTCAGATGATGAGGATGACAGAGAATCAGAAGAAGAGGATGCTGAACAAATTGAGATAAAGGATGAGACTGAAACCAATCTGATCAATTTGCGGAGAACCATTTACCTCACGATTATGTCCAGTGTTGATTTTGAGGAAGCTGGCCACAAGTTATTGAAAATAAAACTTGAACCTGGTCAAGAGATGGAACTGTGCATAATGCTGCTGGAATGCTGCAGCCAGGAGAGAACGTACCTGCGTTATTACGGGCTGCTGGGGCAAAGGTTCTGCATGATCAACAAGGTTTATCAGGAGAATTTCGAGAAGTGCTTCGTCCAGCAGTACTCCATGATTCATCGCCTCGAGACGAACAAACTACGGAACGTGGCCAAATTCTTTGCCCATCTGCTCGGCACCTACGCCCTGCCCTGGCACGTCCTCGCCTACATCCGCCTCACCGAAGAGGACACCACTTCCTCCTCCCGAATCTTCATCAAAATTCTCTTCCAGGAACTGTCGGAGCATCTGGGCATACGGCTGCTGAACGAACGGCTGAACGATCCGACGATGCTGGATTCGTTCGAATCAATCTTTCCCAGGGACAACCCGAAGAACACTCGGTTCTCGATCAACTTCTTCACTTCGATCGGCCTCGGAGGCATCACGGAGAACTTGCGGGAGTACTTGAAGAATATGCCGAGGCTCATCATGCAGCAGCAAAAGCCCGCTTCCGATTCCTCAGGCGATGAATCCGGCAGTTCAAGCAGCGGCGATGATGATCAGTCTTCCTCCGATTCCGATTCCGATTCCGATTCCGATTCTTCCGACTCCGACCCTAAATCGAGGTCTGATGATCGTCGCAAGAGGCAGAGAAAACGATGACGAAGTGAAATCTGAAATTTAAAAACCTCGCATTTTCCGTTGCCCGGCGCGGTGCGTTAGTCGAGTGCTCAATTTTCGATGGTCATTCTGTGCATTGTATGCTTCTTGTGCTTATCAGCCTTTTTTATTCTCCTCTTTCTGTGTTTCATAAAAAATTTAGGGTAATTGTATAATTATTTTATTTGGAAATTGCAAACTTGGGCCTTGTACTTTTACTAATTTATTTTTCGCTCTTCTGATATCTAAATTATACTAATTAAAATTTTCGTA

Network for GWHGAAEX009654

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02847.16	MA3	372	478	4.70E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.270
SRP064423	SRR2545915	Juvenile tuber	20.920
SRP108465	SRR5643513	five period of Gastrodia elata	26.250
	SRR5643514	five period of Gastrodia elata	25.070
	SRR5643515	five period of Gastrodia elata	27.240
	SRR5643524	five period of Gastrodia elata	25.580
	SRR5643525	five period of Gastrodia elata	26.260
	SRR5643528	five period of Gastrodia elata	21.850
	SRR5643658	five period of Gastrodia elata	28.440
	SRR5643659	five period of Gastrodia elata	33.030
	SRR5643660	five period of Gastrodia elata	33.640
	SRR5643661	five period of Gastrodia elata	34.010
	SRR5643662	five period of Gastrodia elata	35.070
	SRR5643663	five period of Gastrodia elata	31.130
	SRR5643664	five period of Gastrodia elata	32.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	29.160
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.660
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.600
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.950
SRP279888	Gastro	Gastrodia elata tuber	30.97
	Juven	Juvenile tuber	35.41
	Mother_Gastro	Mother tuber of Gastrodia elata	27.22
	Mother_Juven	Mother tuber of Juvenile	25.34