Detail information of GWHGAAEX009655/evm.TU.scaffold_251.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|331698915|ref|YP_004335154.1| | 6.00E-26 | serine/threonine protein kinase [Pseudonocardia dioxanivorans CB1190] |
| nr | gi|695033285|ref|XP_009404143.1| | 0 | PREDICTED: probable receptor protein kinase TMK1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P43298|TMK1_ARATH | 0 | Probable receptor protein kinase TMK1 (Precursor) |
| trEMBL | tr|Q10DW6|Q10DW6_ORYSJ | 0 | Protein kinase domain containing protein, expressed {ECO:0000313|EMBL:ABF98558.1} |
| TAIR | AT1G66150 | 0 | transmembrane kinase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000261 | 288727 | 293373 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009655
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 100 | 135 | 1.40E-05 |
| PF13855.5 | LRR_8 | 162 | 219 | 9.40E-07 |
| PF08263.11 | LRRNT_2 | 403 | 439 | 0.00083 |
| PF00069.24 | Pkinase | 669 | 942 | 8.30E-47 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-IX |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.990 |
| SRR2545915 | Juvenile tuber | 17.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.540 |
| SRR5643514 | five period of Gastrodia elata | 21.190 | |
| SRR5643515 | five period of Gastrodia elata | 23.800 | |
| SRR5643524 | five period of Gastrodia elata | 18.930 | |
| SRR5643525 | five period of Gastrodia elata | 17.500 | |
| SRR5643528 | five period of Gastrodia elata | 12.450 | |
| SRR5643658 | five period of Gastrodia elata | 25.820 | |
| SRR5643659 | five period of Gastrodia elata | 18.160 | |
| SRR5643660 | five period of Gastrodia elata | 11.540 | |
| SRR5643661 | five period of Gastrodia elata | 15.100 | |
| SRR5643662 | five period of Gastrodia elata | 7.950 | |
| SRR5643663 | five period of Gastrodia elata | 12.170 | |
| SRR5643664 | five period of Gastrodia elata | 7.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 43.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 35.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 51.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 38.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 45.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 58.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.58 |
| Juven | Juvenile tuber | 15.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.13 | |
| Mother_Juven | Mother tuber of Juvenile | 4.62 |