Detail information of GWHGAAEX009665/evm.TU.scaffold_251.35


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743773878|ref|XP_010917292.1|5.16E-78PREDICTED: protein Barley B recombinant-like [Elaeis guineensis]
Swissprottr|Q8GUC3|BBR_HORVU5.00E-63Protein Barley B recombinant
trEMBLtr|B9N3A2|B9N3A2_POPTR1.00E-76GAGA-binding transcriptional activator {ECO:0000313|EMBL:ADV59350.1}
TAIRAT1G146851.00E-60basic pentacysteine 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000261620668622222+
Transcript Sequence

Network for GWHGAAEX009665

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06217.11GAGA_bind12955.40E-82
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyBBR-BPC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.330
SRR2545915Juvenile tuber7.530
SRP108465SRR5643513five period of Gastrodia elata12.090
SRR5643514five period of Gastrodia elata7.710
SRR5643515five period of Gastrodia elata7.310
SRR5643524five period of Gastrodia elata6.740
SRR5643525five period of Gastrodia elata7.380
SRR5643528five period of Gastrodia elata5.480
SRR5643658five period of Gastrodia elata5.650
SRR5643659five period of Gastrodia elata8.050
SRR5643660five period of Gastrodia elata6.770
SRR5643661five period of Gastrodia elata8.340
SRR5643662five period of Gastrodia elata6.460
SRR5643663five period of Gastrodia elata8.040
SRR5643664five period of Gastrodia elata6.920
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.350
SRR6049655Rhizomagastrodiae_C368-T10_good_110.150
SRR6049656Rhizomagastrodiae_C368-T07_good_111.940
SRR6049657Rhizomagastrodiae_C368-T07_good_111.720
SRR6049658Rhizomagastrodiae_C368-T04_good_110.520
SRR6049659Rhizomagastrodiae_C368-T04_good_19.360
SRR6049660Rhizomagastrodiae_C368-T01_good_18.430
SRR6049661Rhizomagastrodiae_C368-T04_good_111.370
SRR6049662Rhizomagastrodiae_C368-T01_good_19.040
SRR6049663Rhizomagastrodiae_C368-T01_good_18.400
SRR6049664Rhizomagastrodiae_C368-T10_good_19.860
SRR6049665Rhizomagastrodiae_C368-T10_good_19.860
SRP279888GastroGastrodia elata tuber 12.40
JuvenJuvenile tuber15.08
Mother_GastroMother tuber of Gastrodia elata 9.86
Mother_JuvenMother tuber of Juvenile 23.93