Detail information of GWHGAAEX009683/evm.TU.scaffold_252.18


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|312115369|ref|YP_004012965.1|4.00E-4050S ribosomal protein L11 [Rhodomicrobium vannielii ATCC 17100]
KOGKOG32573.00E-91Mitochondrial/chloroplast ribosomal protein L11
nrgi|641852647|gb|KDO71512.1|1.50E-91hypothetical protein CISIN_1g031693mg [Citrus sinensis]
Swissprottr|O78412|RK11_GUITH1.00E-3150S ribosomal protein L11, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00736}
trEMBLtr|A0A067G7I7|A0A067G7I7_CITSI6.00E-92Uncharacterized protein {ECO:0000313|EMBL:KDO71512.1}
TAIRAT4G354903.00E-91mitochondrial ribosomal protein L11

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000247341271342866-
Transcript Sequence

Network for GWHGAAEX009683

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03946.13Ribosomal_L11_N15731.90E-23
PF00298.18Ribosomal_L11781481.60E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02867RP-L11, MRPL11, rplK Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.420
SRR2545915Juvenile tuber16.210
SRP108465SRR5643513five period of Gastrodia elata16.220
SRR5643514five period of Gastrodia elata15.580
SRR5643515five period of Gastrodia elata14.110
SRR5643524five period of Gastrodia elata12.870
SRR5643525five period of Gastrodia elata15.150
SRR5643528five period of Gastrodia elata15.400
SRR5643658five period of Gastrodia elata12.560
SRR5643659five period of Gastrodia elata24.250
SRR5643660five period of Gastrodia elata24.570
SRR5643661five period of Gastrodia elata27.490
SRR5643662five period of Gastrodia elata27.920
SRR5643663five period of Gastrodia elata23.800
SRR5643664five period of Gastrodia elata26.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.030
SRR6049655Rhizomagastrodiae_C368-T10_good_152.710
SRR6049656Rhizomagastrodiae_C368-T07_good_118.060
SRR6049657Rhizomagastrodiae_C368-T07_good_115.800
SRR6049658Rhizomagastrodiae_C368-T04_good_116.190
SRR6049659Rhizomagastrodiae_C368-T04_good_118.720
SRR6049660Rhizomagastrodiae_C368-T01_good_118.910
SRR6049661Rhizomagastrodiae_C368-T04_good_120.520
SRR6049662Rhizomagastrodiae_C368-T01_good_121.100
SRR6049663Rhizomagastrodiae_C368-T01_good_123.170
SRR6049664Rhizomagastrodiae_C368-T10_good_126.840
SRR6049665Rhizomagastrodiae_C368-T10_good_126.840
SRP279888GastroGastrodia elata tuber 19.81
JuvenJuvenile tuber11.46
Mother_GastroMother tuber of Gastrodia elata 14.38
Mother_JuvenMother tuber of Juvenile 10.17