Gene detail

Detail information of GWHGAAEX009684/evm.TU.scaffold_252.20

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|283781652\|ref\|YP_003372407.1\|	4.00E-19	serine/threonine protein kinase [Pirellula staleyi DSM 6068]
KOG	KOG1187	2.00E-122	Serine/threonine protein kinase
nr	gi\|743803226\|ref\|XP_010926863.1\|	1.35E-163	PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Elaeis guineensis]
Swissprot	tr\|Q9LYU7\|CRN_ARATH	6.00E-123	Inactive leucine-rich repeat receptor-like protein kinase CORYNE (Precursor)
trEMBL	tr\|B9GMT0\|B9GMT0_POPTR	7.00E-142	Uncharacterized protein {ECO:0000313\|EMBL:EEE84154.2}
TAIR	AT5G13290	2.00E-122	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000247	389934	392883	-

Transcript Sequence
>GWHTAAEX009684 AAGAATATGTCTTCCGAAAGCTCAAACTGTGAATGTAAGGGAATCCGCCTAGAAGATCAACCCGAATGGAAGGGGCCATGAGTGACGGCAACCCCATAGGAGCGCTGTAGCTTTGAGGCCCTAGCTAGCGAGAAAAAACCCTAGCTGGCGAGATAAAGAAAGCTTCGTTCTTAAAAATTATTAGGTCCATCCCCGCGAGATATGGGTAAAATTTGCACGGGAAAACTTTATCGATTTCCGCGACCGCAGGTGGGCGAGCGAGGCTGCACGGGAGGCGCGAGTTGTCAAATCCGTTGTTTTTTAGTGACACAGGCGAATGTTGCTGTTCTGAACATTATTACACACAGTACACCCCCGATACTTTAATTTTCTTCGAAAATATTTCTTTTTCTTGAAAACTTCGTCTTTGTACCCTCTTCCTTGCTCAAGAAAACTACATTCAGTGGCTTTTTTGAAAAAATAAAAAAAGAAAGATTCCTCTTTCTTTTTTTCAGAGAAATTCCGAGCCTAGCCTGGGTGCCTTTACAGCCCCTCCATTTAGTTCCATTTTGAAATTCTCTCCAGACTTCCCCTTCAAAAACCATTTCTTCTTCTTCTGATGAATGTTGGTTACTGGTGATGCAAAGCAAACCGAACGATGATGGCTTCAAAAATCAATCCTTAGTCTGCTTGTAATTTTTCGGAAGGTTTCCTCATCTTGATGGAGGAAAAACCCTGTAGAAAAACCCTAGCAATTGAATCCGTTTGTTGCCTCCTCTTCTTCCTCCTTTCCGAAATCCCAGAAGCTGCCTCCTCGTCCGATCTTTCTTCAATACTTTTCAATTCCCCAAGTTCTTCCCCACGATTCCTAAAGCGAATCCTCCTCGGCATCCTTTTGGGCTCTTTCACAGGTGCTGTTGCCTCCATCATCTTCCTCTTCTCTATCCGCCTCTTTCTCCTCTTTGCCGACCGCACTCCAATACTCAAAGGCCCGGTCATCTTCTCCCCAAAGATCCCTCCCAAATCCCTCAGACTTGTTTTCCCTAGAAGCGATGAATCTCCGCAAATGCTTGGATCCAGCCCCAATGGGAAGTACTTCAAATTATCGCTCAATGGCGAGGCCTCGGTTGCAGTAAAGCTGCTCGAATCCAGCTTCTCCGCTGAGCCAAATTCATGTTCGTGGAAGAGGAGAGCGCAGAGAGAGCTCGAACGCCTCGCAAAAGTCAGCCACCGGAATGTGATGAGCTTGAGGGCCTATGTGAGGGACCATGACCGCCTCTCTTTGGTCTACGATTATGTCTCCGGAGGAAGCTTAGAGGATGCCATGAAAAGGGTGAGGCTGAATCAGCTGAGGCTTGGATGGGAGCTGAGGCGTCGGGTTGCTGTCGGGATAGCCAAAGGGCTCAAGTATCTGCACTTTGAGCTCGTTCCGAGAATCTTGCATTACAATCTGAAACCCTCCAATGTGCTGCTGGATGAAGGTTTAGAGCCCAGGCTGGGTGATCTCGGGTTGGCAGGCCTGGTTGTGGCTGCTGTGGATGCCTCACTCTCCTCTTGCTATGTTGCACCGGAGTGTTTTCAGAGTTGCAGGTACACTGACAAGAGCGACATATATAGCTTTGGGGTGATTCTCAGCTTGTTGTTGACAGGGAAAGATCCCTGTGATACATTCTTTATGGAGGAGGGGGGGAGAGGAGGGCTTGTCCCTTGGTTGAGGCATCTGCAGCAGGTTGGAGAGGCAGGGGATGCTCTTGATAAGGGACTGTTGGGAGAAGGAGAAGAGGAGGAGATGTTGATGGCAATAAGAATTGCCCTTGTTTGCTTGTCTGACCTGCCCGCCGACCGCCCTTCCAGCGACGAGCTTGAAGCTATGCTCTCGCAGCTCCAAAGCTTTTGATGCTATCTGGAATCTGTCTTGGCGGGTCTCTACTGTTCGCATTCAAATGAATTTTATATTGGTTTCATTGATGCTTGCTATTTGTGGAAATTTGCTGTGGGTTCCAGTATTTCTTCATGAGTTTGTCAGCTGATGATATTGACAAAAAATTTCCATTTAAATGGCTGTAGTTGCTTTGCCTTATTAATGATTGTTAATAAAATTGGAAAAAGAGGGCCAGCGGTTGTAGAGAACAATCACATTGCATAAAACGGATGATTTTTTGTAAAATTTCTTTGATGGAATAAAAGCACTAGAGAGGTGGTGAACCTGCT

Network for GWHGAAEX009684

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	117	315	2.90E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.430
SRP064423	SRR2545915	Juvenile tuber	5.770
SRP108465	SRR5643513	five period of Gastrodia elata	7.050
	SRR5643514	five period of Gastrodia elata	7.510
	SRR5643515	five period of Gastrodia elata	4.910
	SRR5643524	five period of Gastrodia elata	5.560
	SRR5643525	five period of Gastrodia elata	5.000
	SRR5643528	five period of Gastrodia elata	2.300
	SRR5643658	five period of Gastrodia elata	2.590
	SRR5643659	five period of Gastrodia elata	7.720
	SRR5643660	five period of Gastrodia elata	5.640
	SRR5643661	five period of Gastrodia elata	7.070
	SRR5643662	five period of Gastrodia elata	4.900
	SRR5643663	five period of Gastrodia elata	6.280
	SRR5643664	five period of Gastrodia elata	6.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.890
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.930
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.500
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.500
SRP279888	Gastro	Gastrodia elata tuber	4.46
	Juven	Juvenile tuber	5.08
	Mother_Gastro	Mother tuber of Gastrodia elata	3.93
	Mother_Juven	Mother tuber of Juvenile	1.52