Gene detail

Detail information of GWHGAAEX009686/evm.TU.scaffold_252.23

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3991	5.00E-139	Uncharacterized conserved protein
nr	gi\|672187862\|ref\|XP_008813441.1\|	4.65E-152	PREDICTED: ubiquitin thioesterase otubain-like [Phoenix dactylifera]
Swissprot	tr\|Q8LG98\|OTUBL_ARATH	2.00E-139	Ubiquitin thioesterase otubain-like
trEMBL	tr\|M5XZ09\|M5XZ09_PRUPE	7.00E-142	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24495.1}
TAIR	AT1G28120	5.00E-139	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000247	505254	536495	+

Transcript Sequence
>GWHTAAEX009686 CTTGGGCCGTTAGTCCTCACATTTGGGCTAATTCGGCTTATGACTGGGTACAGAAGATCACTCGAGCGATGCAAAGTCAGCCCGAGAGTCCTATCCATTTTTTGTTCCGATCAGAAAGCAATATTCACGGATTTTGACGCGGCGTACCGCCGTCTACGATCTAGACATCACTGGCCACGAAGGGCTCCACGCCTTATTTAAGGAAAGAGTGGGACGGAGAAGTCTGGAAATGGCCAACCTAGCGGACGCAAGCCCGCGGAAACGGAAGGCTTTAGACGGTGAGCTCGGGATGGAGGCAAGCGAGGTGACTGAACAGTCGGAGACGGAGGAGGCCACAATTATTCCGAACCCTAATGACAGCGCTGCTTCAGGAGCGAGCGGAAGTTATGAGGTGTTACTTGATGAATACGAGTGGTCCTGCTGTAGAGATGATGATATCATGCAGCAGCAAGTCGCCATTAGGGAGGAGACAATCAAGATTCCATATGTCGGGGACAAGGAACCGCTTTCTGCTTTAGCAGCTGAGTTTAAATCTGGCAGCTCCATTCTTAAGGAGAAAATCAGGTTGCTTGGAGAACAATTTATAGCTCTAAGACGAACACGTGGAGATGGAAACTGCTTTTATAGAAGCTTTATGTTTGCTTATCTAGAACATATATTAGAAAAACAAGATGTTGCTGAAGCTGAACGAATTACTAGAAAGGTTGAACAATGTAAGCGCACTTTGCAGAGTCTTGGCTACACAGAATTTACATATGAGGATTTCTTTAGTATATTCATGGAGCAGCTGGAAAATATTCTGCAGAGTGAAAAAACACCCATAAGCATCGAGGAGCTTTTGTCAAGGAGCCGGGATCAGTCTGTCTCTGAATATATTGTAATGTTCTTTAGATTTGTCACATCTGGAGAAATTCGTAAGCGGGCAGCTTTTTTTGAACCGTTTATTGCTGGTTTGACAAACACTAGCGTTGACCAGTTCTGCAAGTCATCAGTGGAGCCGATGGGGGAAGAATGCGATCATGTGCACATAACAGCCCTGTCGGACGCCCTGGGCGTGGCTATACGTGTGGTGTATCTGGACCGCAGCTCCTGCGACAATGGCTCGCTGGTGGCTGTAAATCATCATGACTTCCTTCCTGCACTTGATGAGGCCGCATCCTCACCCTTTATTACATTGCTGTACCGTCCCGGCCATTACGATATTCTCTACCCCATCACTTCATCATCATCATCATCATCATCATGAGGCTGCTTGCTCTACTTAGATGCAGATGAGGAAACAACCACTGAAGAATATGAATTTTACCTCTTCCTTTAGTTTTCCTTGAGATTTTTCTTTAAAGAGTTGGTTAAACTTTGCTTCCCCCTAAGGCTGACTCCGACAGCTAGCTATTTCTCAACATTTCGTTGTTTAGATTTTCCTTGCACAGTAGACCAAATATATATATAAATATATACACATGCAGAAGAATTTAATAGTAATAATACGTAATGATAATATATTAATTAAATTTAGAGAAGAAATTGTCCTCTACATGCTTGAGCTCGGACTTAATATTTAG

Network for GWHGAAEX009686

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10275.8	Peptidase_C65	82	328	5.20E-84

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	OTU

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	56.740
SRP064423	SRR2545915	Juvenile tuber	53.090
SRP108465	SRR5643513	five period of Gastrodia elata	53.000
	SRR5643514	five period of Gastrodia elata	47.750
	SRR5643515	five period of Gastrodia elata	47.700
	SRR5643524	five period of Gastrodia elata	49.280
	SRR5643525	five period of Gastrodia elata	33.440
	SRR5643528	five period of Gastrodia elata	28.960
	SRR5643658	five period of Gastrodia elata	27.960
	SRR5643659	five period of Gastrodia elata	37.970
	SRR5643660	five period of Gastrodia elata	39.750
	SRR5643661	five period of Gastrodia elata	37.260
	SRR5643662	five period of Gastrodia elata	32.830
	SRR5643663	five period of Gastrodia elata	34.060
	SRR5643664	five period of Gastrodia elata	33.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	50.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	44.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	51.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.570
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	51.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	52.970
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	55.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	55.430
SRP279888	Gastro	Gastrodia elata tuber	57.38
	Juven	Juvenile tuber	50.34
	Mother_Gastro	Mother tuber of Gastrodia elata	42.51
	Mother_Juven	Mother tuber of Juvenile	39.83