Gene detail

Detail information of GWHGAAEX009688/evm.TU.scaffold_252.25

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4674	Uncharacterized conserved coiled-coil protein
nr	gi\|672140031\|ref\|XP_008793820.1\|	PREDICTED: nuclear-pore anchor isoform X1 [Phoenix dactylifera]
Swissprot	tr\|A4GSN8\|NUA_ARATH	Nuclear-pore anchor {ECO:0000303\|PubMed:17513499, ECO:0000303\|PubMed:21189294}
trEMBL	tr\|D7T103\|D7T103_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI24130.3}
TAIR	AT1G79280	nuclear pore anchor

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000247	583595	719731	-

Transcript Sequence
>GWHTAAEX009688 AATGAAAAGACAATCTTATTATTAACCGATCAATTTCACCCTAATTGCAGCACTTCTCTGCTTCATCACCGCCACGCTTTAGCTCACTTTCCCGTCTGCCACCCCACTGTTCTTTGCCATCCAAACCCTAGATTTTAATGTGATTGCCACCCGCAGCCACCACCATGCCTCTCTTCCTTTCGGACGAAGAGTTTAGTCTTTTATCTAATGATGCCACAGCGGTAGCTGAAAGGGCAGACGCCTTCATCTGCAATATTCGTCAGCAACTCGATGTCGTCCGAGCAGAGTCCGATGCCAAATGCATCGCGGATGAGCAGAACTGCGCTCTCCTCGAGCAGAAATATGCCACCCTGTGCTCTGAGTTCTCGAGGCTTCAGTACGAGAACGCTCAGCTGTCTGCATCATCCGAGAAGACTCTTTCAGAGCTCGCTGACGCGCAGACTGAGAAACACCAACTTCATATTGAAGCGATTGGTAAGGACCGAGAGATAGAGAAGCTCTCGCTGGAGGGTGCAGAGCTACGAAGTTCCAAGCGTCAGCTTCTGGAGTTGGTTGAGCAAAAGGATGCGGAGATTAGAGAGAGAAATGTCACCATTCAATGCTACGTTGATAAGATTGTTCATTTGACAGAGAATACTTCGTCAAAGGAATCTAAACTATTTGAAATTGAGTCTGAGTTGATGCGTTGTCAAGCTATTTGTGCTCGACTTAGTCAGGAGAAAGAACTTCTTGAGAAACAAAATGAGTGGCTTGATGAGGAGCTATCCACAAAGGTTAACAGCCTTTTTGGGCTGCGTAAAACTCAAATGGATGTTGAAGCAGAGTTGTCTGGTAAAATTGCTGATTTAGAGAGGCAAGCCAAGGAATATTTTGATTCATTAAACCATGGTAAGGATAGAATAAAGGAACTGGAGCTAAGAGTCAAATCTTTGGAAGAGGACTTGTGCTCATCCAAGGACATGGCATCTACTAATGAACAACATTTTAATACGGAAGTATTAACTGTTAATAAGCTTGTTGAATTATATAAAGCAAGTTCCGAGGAATGGTCCAGAAAGGCGTGTGAACTTGAGGGTGTCATTAAGGCCCTTGAGACACATCTAAGTCAAGTTGAAGATGGCTCTAAAGAGAAATTGGAAAAGGAAACTTCTTTGAGGAAAGATCTTGAGAAGGAGGTCACTGATTTGAATTTGAAGCTAGAAAAGTGTGAAGCTGAACTTGAAAACACAAGGAAAGCTAATGAATCAAGTCTTCTTCCTTTGTCATTATTGCCTGTTAGCTCACATACTGAAGACCTGGTCATCGATGAACCTGGAATCAATGCTAGCCAGATTCTTGTTCCTAGGATTGCAGCAGGTGTTTCAGGAACTGCGTTGGCTGCTTCATTGCTTCGTGATGGATGGAGTCTTACTAAAATGTATGAGAAATATCAAGAAACTTCTGATGCTCTACTGCATGAGAAATGGGGTCGAAAACGTGCTGAAGCTGTCTTGGAACGGATTCTGCATGAGATAGAAGAGAAAGCTGAAATGATTTTGGAAGAGCGAGTGGAGCATGAGAGAATGGTAGAATCATATGCTGCTATGAATGAAAAATTGCAGCAGGCAATTGTGGAGCATGATAATTCTGAACAATCTTCTAGGAATTTGAAAGCTGAGTTGAGACGGCGTGAGCGAGAATGTTTAATAGCGCAAAAAGAAATAACTGATCTTCAAAAGCAAGTTTCAGTATTACTTAAAGAATGCCAAGATATTCAACATCGTTGTGGTGGCAATTCACGGATGCCTGTGGAAGATACTTTGATTGCCATTTCTTCGGTTAATGGTGATGTAATTAATGCTGACACATATACTTCCGAGCATCCTGTGCTGACTTTTAAGGACATTAATGAACTTGTGGAACAAAATGTTAAACTTAGAAGTCTTGTGCATAAACTTTCTACTGATGAGGAGAAAAAGGAAGCCGAAATGAGGGACAATTTTCATACTGAACTTCAAAGAGCAACTGACGAAGCATCATCAAAAGTAGAGGTTGTTTTAAAAAGATCTGAGGAACAAACATGCTTGATAGAGTCACTGCATAATTCTGTAGCAATGTATAAAAGATTATATGAGGAAGAACATAAAATCCGAACTAGCAATGTATCTGTCTCAGCTGTTTCAGATAATGGAAAGAAAGAGCTTACGCTTTTACTTGAAGGTTCACAGGAAGTTTCCAAGAAAGCCTATGCGCAACTTTCTAGCCGTGCAAAAATTTTGGAAGAAGATGTAGCAAGATTGAGTACGGAGCTTATTTCAGCACGAGCAGATCGTGATAAAATGTCTCTAGAAGCTGAATTTTCAAAGGAGAGACTAGATAGTTTCGTGAAGGAATTTGACCATCAGAGAGTGGAAACCAATTCCGTTTCAGCTAGAAATTTAGAATTGACCCATTTGCTTATTGATTATCAAAAGAGACTTCGTGAAAGCTCAGCTTCCTTGCAAGTCTTAGAAGAAAATGCACGGAAGCTTTCTATGGAGGTGTCGATTTTGAAGCATGAAAGAGAAATATTGTTGAGTACTGAAAAAAGAAACTCTGAAGAGATTCAAACCTTGATGGAAAGAGTGCATCGCCTTCAGTCAAGTCTGGATACCCTTCAAAGTGCTGAAGAAATTCGTGAGAATTCTCGACTTAATGAGAGAAAGAAACAGGATGATTATGTTAAACGACTTGAAAGGGATTGGGCTGAGATGAAGAGGGATATTCAGGAAGAGAGGGATCGTGTTCGTGCTTTAACACATGAAAAGGAAAGAGCGATTGAAACTTCAATGGGTCACGTAGAAGACATAAGAAAGGAGTTGGCCAATGCTTGGCATTCTGTCACAGTTGCTGAATCTAGAGCAGCAGTGGCCGAGGCTCGATGTTCTGATCTCGAGGCAAAAATCAACCGCACTGGAAAAGAGGCTATAGCTGTGGTTGGTGATCAAGACCCTTCAGTACTTTCTACGAATGGGATATCCGAGGAATTGTGGAAAGCAAAGCAGGAGTTGGTGAAACTTAAAGAAGAAGTTTGTGCCAGCAAAGAGTACATGCTACAGTATAAAGAATTGGCTCGCACAAATGAAAATGCGTTAAAGCAAATGGAATTGGCACATGAAGACTACAAGTTAGAGACTCTTAAATTGAAGAAGGTTCTTGAGGATGAAGCTCAATCTCTAAAAAGTCGCATTTTAGAACTTGAACAAAACTATTTGTTGAAATGTGAAGAAGCTATTTCTGCAACCGAAGCTAAAGAGACGGCCCTTTCTGCCGCAATGGTTGAAACTTTAAGATTGAGGGATGAAGTTGCTGAAAATTTAGCAAAGGCCAAACTATTAGAAGTTCTAGTTTCTTCTCTAAAAGATGATGTGGAAAAAGAGCATAGGCGGTGGCGTATTGCCCAAGACAACTATGAAAGACAGGTAATCCTTCAATCTGAGACCATTCAGGAATTGACAAATACCTCGAAGGAACTTTCTCTAAAGCAGGCAGAAATTTCAAGGTTGTGCGAGCTTTTAGATGCAAAAAAAGTTGAAAATGAACTTTTGAAGTTATCATGGGAAACAGAAAAATCTGAATTACAGCAGACAAAAACTGAAGCAGAAAGGAAATGCAATGAAATGGATGAACAGAATAGAATTTTGCACAATCGATTGGAAGCATTGCATGTTAGGTTGGCTGAGAAGGCACACAATTCTGCTGAGCTCTCATCAGTTAGTTCGAAAGGAGATTCTGACCTTCAGACTGTTATAAATTATCTGCGAAGGTCGAAAGAAATAGCAGAAACTGAAATTACCTTGTTGAAACAAGAAAAACTAAGACTACAATCCCAACTTGATGGTTCTAGGAAGGCCTTGGAATCCGCTCAAGCTTTGCTTCATTCTCAGCTTGAGAATTCCAGAGAACTATTGTTAAAGGATGAGGAATTCAAATCTCTTCAGCTTCAGGTGAGGGAAATTAATTTGCTTCGGGAAAGTAATGTACAGCTTCGGGAGGAAAACAAACACAACTTTGAAGAATGCCAGAAATTTCGTGAAATGGCTAAAAAAGCTAAATCTGAAGGTGATTATTTGGAGAATCTCTTAAAGCAGAAACAATTTGAAGTTGATGGCTGTCAGAAAGATGCTGAGTTGCTCAAGATTGAGATCAGCGATCTGAACAATAGAAATGCTGAGATTCTTGAGAGTTGCAAGGATATCAACAATAATGAATTGGAACTGATGAAGGATGAGCTGGAACAGATTAAGAATACTGTAGCTGAGAGGCAGGAATCAATAATGAAGTTGGAGCATGACCTTGTTAGTTGCCACGATGAATTATCTGAAAGGGAGAAAAAGCTGAATGAAGCTCAAAAAGTTGAGGCAAACTTTAAACAGGAAATTGACAGACTTAAAAGACAGTTAGCTGCATGGAAGAACAAAAATCAATCAATAGTGAAAGATAAGGAAGAGCTGCACTCTAAGAACCAAATGCTGATAAAAGAGATTGAGGAACTTAAAGTCATAAACCAAACAATAATGAAGGAGAAGGAAGAATTGAACTCAAGAAACTTGGTATTAGCAAAGGAGAAGGAGGATGCCTGCACTAAAACTCAAGCCTCAACAAAGGAGAAGGATGAATTCGATTCCAAACTTCAAGCATTAGAAAAAGAGAAGGAGGAACTTAGCTCCAAAAATCAAGCACTTATGAAGCAAATTGAAGATTTTAAAGCAGGCAGGAAGGTACTTGGTGATAGTGAACAATCCAAAAAAGAACAAGAAAAGGACACAAGGATACAGATGTTGGAGAAAACATTGGATCGGGTGAGGGTTGATTATCTGAATGAGAAACAAGCAAGGAAGAAGACTCAGATGTTAGTGGTAGATTGCACCAACAAAATTAATGTGGCTAAACAAAAAGTAGATGATGAACTACAGAAGCACAGGAGTGCTATTTCTGCTGTATTAGAGAAAGCTGGAATAGTAGCTTCCCAGTTTCCTTCAGGCAATTCTTTGGATGAGCAGACATTAGCATACTTCCAATCCATTAGTTCTTTAGAAGCAGCGGTAACTTCATTCGTTAATGATGTTGATGGATCCCAATCTTCTCCCGCTAGTGTTGCATCAACTCTCGATACTTTGTCTGCTTCTGCAGGTCAGAAGGTTCCTTCTCAACAAACAAAACTGTCTAAACCTAACACAAAAATTACCGATGAAAGAGAAAATCTATCAAGTGCAGGGAAAACTAACCCTGAAACACGGAGGCCGGTTCGAAGGTTTGTGCGACCAAGTCTCGAGAAGCCCGAAGGGAATACTACTGATGCCGAAATCACGAGTATGGAAATTCCTACTGCTTCCGAGGGGAAGGCAGTTGCATCCATTGATATCGAATCACTAGCTGGGGATGTTCCTGCAGCCCAACTGACACTAGCCCGCAAACGTCTAACCCCTTCTGAGCCAGAGGCGCTGGAAGGAACTGCAGCCATTGATGAGCTTAATGTTCCTGCTTCACCTCCCTCCAAAAAGATAAAAGAACAAGTGGACCTCTCTGAAATCACCACCGAATCTTGCAATATCCTGCCTTCATTCAATAACTTCGACACCACTCCCATAGAAGGAGCATCATTATCTGATGCGCCTGCATCAGCAAATGATGAGGATGGCGTCCCCATTAATGAAGAATTAAAAGAACAGCGAAAGGGCACCCTCGAAACCGCATATATAGATGAAGTTGAATATGAAGGCGGTGATGCAATCACGGAGGGCTCGGACAAGCTGAGCGCTTTGATTGAGGAGCCCCTTGATCAAAACCCGAGGAACGAAGAGAGGAAGGAACTTTCGTATTCAGCAGCCGAAGGCGAAGAAGACAACAGGGAGGAAGGCGAGCTGGAGCAGCAGCCGGACGAGCCAGAGCTGCAGCCGGAAGACCTTCCATCTGATGAAGGAGCCGGAAGTGGTGATGAAGCCGTCATGATGGATGTTGTTGAAATTGCATCTCCGAGCAATGAGCAAACAGCTGATGCTGAAGATGCTGCCGAAGATTCTGAAAGGCGTAATACCTCTGCTGATCAAACCCCTCCAGGAGATGTTGAACAGGAGTCTGCTATCTCGTCCTCACAGAATTTGGCATCGGCGCAGCTGACTCCTTCAACTCCTGCAGAGGCTGGGGATTCTCAGACAGCGAGAGGCTCAAGAACTATATCAATTTCTGAGACCGCTAAGCGGAATGCTCAGCTCAGGCAAGCACGATTGGCTGCTCAGCAGCAGCAACAACAGCATCCACAGCAGCAGCAAAAGCCACCATCTAGAGGAGGGCGGATTCCTATGTTCAGGAGAGACAGCAATCGAGGAAGCCGTGGCCGTGGAGGACGTTGATAGTTATTTATTGATGTTATCTATATGATTATAATCGCAATGGCGGTAGGCGTTTAGCTTGTTGTACTCTTAATGAAAGTAGAACCATACTCGCTCTAAGCCAACGTTAAATAACTAATAGTTATTTTGCTCTCTATTTATTGTTTTGTTCAATCTTAATAAATAACCAGCATGATATGCATAGAGAATAAAAAAAAGTGTTAGCTTTAAATAACTGGAAAGGCTAGCTTCCTCCAATCAAGAAGCTACAAGAACAATTACCACCAAAGCAGCACAGCTCAATTAATATCAAATGCATATTCAATTGTTTGGTTAGTAAAAATGAGATTTGGAATTCTTTAAAAGTGGATAAAGTAGTCATTAGTTGAAACGCTGTGGAAATGTGATTGCATACAAACTATGAACAGATGCTCGTGTATCACAAAGCATAATTGGTTTTGTCGCGTAAATTTACCATTGAAATTACA

Network for GWHGAAEX009688

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07926.11	TPR_MLP1_2	1049	1173	2.70E-23

Protein Sequence

>GWHPAAEX009688
MPLFLSDEEFSLLSNDATAVAERADAFICNIRQQLDVVRAESDAKCIADEQNCALLEQKYATLCSEFSRLQYENAQLSASSEKTLSELADAQTEKHQLHIEAIGKDREIEKLSLEGAELRSSKRQLLELVEQKDAEIRERNVTIQCYVDKIVHLTENTSSKESKLFEIESELMRCQAICARLSQEKELLEKQNEWLDEELSTKVNSLFGLRKTQMDVEAELSGKIADLERQAKEYFDSLNHGKDRIKELELRVKSLEEDLCSSKDMASTNEQHFNTEVLTVNKLVELYKASSEEWSRKACELEGVIKALETHLSQVEDGSKEKLEKETSLRKDLEKEVTDLNLKLEKCEAELENTRKANESSLLPLSLLPVSSHTEDLVIDEPGINASQILVPRIAAGVSGTALAASLLRDGWSLTKMYEKYQETSDALLHEKWGRKRAEAVLERILHEIEEKAEMILEERVEHERMVESYAAMNEKLQQAIVEHDNSEQSSRNLKAELRRRERECLIAQKEITDLQKQVSVLLKECQDIQHRCGGNSRMPVEDTLIAISSVNGDVINADTYTSEHPVLTFKDINELVEQNVKLRSLVHKLSTDEEKKEAEMRDNFHTELQRATDEASSKVEVVLKRSEEQTCLIESLHNSVAMYKRLYEEEHKIRTSNVSVSAVSDNGKKELTLLLEGSQEVSKKAYAQLSSRAKILEEDVARLSTELISARADRDKMSLEAEFSKERLDSFVKEFDHQRVETNSVSARNLELTHLLIDYQKRLRESSASLQVLEENARKLSMEVSILKHEREILLSTEKRNSEEIQTLMERVHRLQSSLDTLQSAEEIRENSRLNERKKQDDYVKRLERDWAEMKRDIQEERDRVRALTHEKERAIETSMGHVEDIRKELANAWHSVTVAESRAAVAEARCSDLEAKINRTGKEAIAVVGDQDPSVLSTNGISEELWKAKQELVKLKEEVCASKEYMLQYKELARTNENALKQMELAHEDYKLETLKLKKVLEDEAQSLKSRILELEQNYLLKCEEAISATEAKETALSAAMVETLRLRDEVAENLAKAKLLEVLVSSLKDDVEKEHRRWRIAQDNYERQVILQSETIQELTNTSKELSLKQAEISRLCELLDAKKVENELLKLSWETEKSELQQTKTEAERKCNEMDEQNRILHNRLEALHVRLAEKAHNSAELSSVSSKGDSDLQTVINYLRRSKEIAETEITLLKQEKLRLQSQLDGSRKALESAQALLHSQLENSRELLLKDEEFKSLQLQVREINLLRESNVQLREENKHNFEECQKFREMAKKAKSEGDYLENLLKQKQFEVDGCQKDAELLKIEISDLNNRNAEILESCKDINNNELELMKDELEQIKNTVAERQESIMKLEHDLVSCHDELSEREKKLNEAQKVEANFKQEIDRLKRQLAAWKNKNQSIVKDKEELHSKNQMLIKEIEELKVINQTIMKEKEELNSRNLVLAKEKEDACTKTQASTKEKDEFDSKLQALEKEKEELSSKNQALMKQIEDFKAGRKVLGDSEQSKKEQEKDTRIQMLEKTLDRVRVDYLNEKQARKKTQMLVVDCTNKINVAKQKVDDELQKHRSAISAVLEKAGIVASQFPSGNSLDEQTLAYFQSISSLEAAVTSFVNDVDGSQSSPASVASTLDTLSASAGQKVPSQQTKLSKPNTKITDERENLSSAGKTNPETRRPVRRFVRPSLEKPEGNTTDAEITSMEIPTASEGKAVASIDIESLAGDVPAAQLTLARKRLTPSEPEALEGTAAIDELNVPASPPSKKIKEQVDLSEITTESCNILPSFNNFDTTPIEGASLSDAPASANDEDGVPINEELKEQRKGTLETAYIDEVEYEGGDAITEGSDKLSALIEEPLDQNPRNEERKELSYSAAEGEEDNREEGELEQQPDEPELQPEDLPSDEGAGSGDEAVMMDVVEIASPSNEQTADAEDAAEDSERRNTSADQTPPGDVEQESAISSSQNLASAQLTPSTPAEAGDSQTARGSRTISISETAKRNAQLRQARLAAQQQQQQHPQQQQKPPSRGGRIPMFRRDSNRGSRGRGGR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09291	TPR, MLP1, MLP2	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006606	Biological Process	protein import into nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	101.010
SRP064423	SRR2545915	Juvenile tuber	76.300
SRP108465	SRR5643513	five period of Gastrodia elata	30.730
	SRR5643514	five period of Gastrodia elata	29.900
	SRR5643515	five period of Gastrodia elata	27.410
	SRR5643524	five period of Gastrodia elata	28.790
	SRR5643525	five period of Gastrodia elata	24.350
	SRR5643528	five period of Gastrodia elata	17.570
	SRR5643658	five period of Gastrodia elata	29.980
	SRR5643659	five period of Gastrodia elata	35.710
	SRR5643660	five period of Gastrodia elata	39.690
	SRR5643661	five period of Gastrodia elata	32.380
	SRR5643662	five period of Gastrodia elata	32.320
	SRR5643663	five period of Gastrodia elata	37.610
	SRR5643664	five period of Gastrodia elata	42.990
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	36.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	58.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	71.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	86.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	66.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	70.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.590
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.900
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.900
SRP279888	Gastro	Gastrodia elata tuber	43.32
	Juven	Juvenile tuber	59.02
	Mother_Gastro	Mother tuber of Gastrodia elata	25.91
	Mother_Juven	Mother tuber of Juvenile	38.30