Gene detail

Detail information of GWHGAAEX009692/evm.TU.scaffold_253.7

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1525	3.00E-91	Sister chromatid cohesion complex Cohesin, subunit PDS5
nr	gi\|672141041\|ref\|XP_008794340.1\|	1.56E-175	PREDICTED: uncharacterized protein LOC103710418 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|O04716\|MSH6_ARATH	2.00E-08	DNA mismatch repair protein MSH6
trEMBL	tr\|A0A061GJL1\|A0A061GJL1_THECC	1.00E-131	Nucleic acid binding protein, putative isoform 1 {ECO:0000313\|EMBL:EOY29352.1}
TAIR	AT4G31880	3.00E-91	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000249	202236	229154	+

Transcript Sequence
>GWHTAAEX009692 CCTTGCTGATATCAACATAAAAGTGAAATATGCAGGCAAGCAAAATAATAAATTTTTTGTCCCTGTGCCAACCCTAGCTAATAATCTCACCGCTTTTCGAACGCTCAGACTCATGTAACTTTGATCTCCGTTTTCTCTGCTCGCGTTATTCTCGATCTGCCTTTGCCGCCTGTTGTCGGGAATTTCCATTGGCTTTTGATGGTGTAAAATTTTGGAGCTTCGTGGTTTCATACACTTTGCGTACTAATGACGCTTGGGGACAAGGAGCTCGAGGATCGGATCGAGGAAGTCGGAAATAGGCTGACGACTCCCCCCTCCGACACGCAACAGCTACTTATACTCCTTGATAAAACTGAGAACTTATTGTCAAGAGTGGAGCAATGCCCTCCTCAGTCAATGCATGTTGCCCTTCACCCTTCTATGAAGGCATTAACAACTAGAGATCTTCTCAGGCATTCAGATCTGGACGTGAAAATTGCTGTTGCCTCCTGTCTCAGTGAAATTACAAGAATAACAGCTCCAGATGCTCCATATGATGATGACCTAATGAAGGAGATATTTGGGTTGATTGTTGGCGCTTTCAAAAGTTTGGATGAGATACCAAGTCGCTCATTTTCTAAGAGAGTTTCCATACTTGAGACAGTTGCCAAGGTCCGATCCTGTGTTCTGATGTTGGACCTTGAGTGCGATGATCTGATATTGGACATGTTTTTCCATTTTCTCAAGACAATCAGGCCAAAACATTCAGAGACTGTTTTCTCTTCTATGGAGACTGTCATGACACTTGTTATAGAGGAGAGTGAAAATATTTCAACCGGACTTTTATCCTGTCTTTTGGGCTATCTTAAACTTGATGAAAAGAATGTTATGTCATCAGCAAAGAAGCTTGCTGAGAAAGTATTGACTAACTGTGCTTTAAAACTGAAGCCTTACTTGTCTGAGTTCTTCAAAGGAATATGTTCTCCACTAAGTGATTATAGCAAAATTGTGGCTGCAGTATGTCAAGGGAACCTTGGTATTATAAGGCAAAATGAAACTAATACCTCTGGTGAAACTCAGGCAGATGATAGCAAGCTATCTGATAGGACTCTTTGTGATGAACGGCCACAGGGATCTGGAAAACAAGAACAAAATGCCGTTCTTCATGAAAAATCTGTTGTTCCTGAAAATGATGTTCTTCCTGTAAAAGATGTTGCTGATGCAGATGTGTCTTGCAAAGTAGCAACGAGCAATGGTGCTTTTCAGATTGGGAATGGGGATTCCGTAGCTTTTGAACAAAAGGCTGAATTATCCCAACCTAGTGATCAATTGAGGGATACTGGTGGATCTATCCTAGTTGCTTCTGATAACTTGGGCTCTGGTGCAGAAAAACGGGATAGTGGGCTAAATCTTAGTTCTCGAAAAGGAAGAAAAAGAAAAGCTTTGGGTAACTTGGTCAGTAATGAACATAATCAATATGATAAAAAAGAGGCTGCTGCTGTTACTGGAAGGAGAAAAAGCCGCAGTAAGCAAGCTGACTTGTCCCAAGCTGGTAGCATTTCTGTCAAGGAGGTAGAAAGAACAGATGGCACTAGAACTGGAATGAAGAAAAAACTTGAGCAAAATTCTGGATTGGCTGATGTTGCTGCTTCTGTTTCGTTGCATACCCCAAAAGAGCATGATAAAGTTCATTTAAAAAAGGGCAGGTCTCGTCATTCAAAATCTTTTGGTAGAAGAAATTCTGCCAATAAATCTGTAGTGGATGGCTTATCTAGTGCCACTGGGCATAGGGGCTTTCTGGAAAACAGTCAAACAGCTAGTGTAGATTTTCCTACAACAGTGTCAAGCTCAAAAAAATCTGAAGCAATTAATGAATCAGAAAGAAATCTATTCAAATGTTCTTCTAGCAAGCGACTGACATGTGTTGAGGATAGCATAACCACTCCAACATCTGCAACATGTGATTCTGAAACAAAGCATCTGAGGCAGAGAAGTAGAAGTGGATCTAAAAAAGATGCTAGAGAAATAGAATTTTCAGAAAAGAAGAGTGGTACAGGTAGAAGACAGAAGAAGGGAGGAGGCTTGCTTGCTGATGTGGAAGATAAAGAAGTGAAATTAAAGGAACTTGTTTCTTCTCGGAAATCAATGAAAAAAGAACCAAGCAAAGATCAGAACCATTTGAAGGAAGTTTATGAAACTGAATCTACTAGGAAGCCTGGTCTGGCTACACAAGAGACATTTGGAGTGTCGAAGCGCAGGAAAAATGATAAGCTGCTTGTTGGCAAAAAGATAAGAGTTTGGTGGCCGGAAGATCAGAAATTTTATGATGGTGTTGTTGATTCTTTTGAACAAAATACAAAGAAACATACTATTTTTTATGATGATGGTGATGTGGAGGTTCTGCTCCTGAAGGAAGAGAAGTGGGAGATTATTGAAGCTGAAACAAAATCTGATGGGGTGCTTGAAAATACTACGCCAGATAATGCTTCTGTAAGAAAGAAAAAGAAAGTGAAAGGCCGCCAAGATGAAGCTGCATCTGATAAATCAGAGACTGATCCTCCATTGAAAAGTCCAAGTTCTACTATCAAAATCGAATCAATTGATAAGCTTTCCAAGCGTAAAGGGAGGCCTCCTGGTAAAACAAGCGATGACATGCACAAGGAATCCAGCAAACGAAGAGGAAAGTCTACAAAAGGACGTATAGACAAGAGCTACAAAGATAACGACCAGCTTACCGAGACCACAAACAAGCTGAACAATGAAGTGCCGGGGAAGAAAAGCAAGTCTGACACACCAAAATCTGCTGCTGACAAGATTGACAATGCTACACCTAAATCGGGTGATACGGTTCGACTCAAAACTCTGAAGATTCGTGGTAAAGTGAAGGAAGACTCTGGATTGCCCGATGACATCGGCCCCAAGTCCAGGAAGAAGTCAGGGGATTCCCATGATTCTGGAGTTAAACCAAAGGTCAATGGCTCTCCTAAACCTCATACTAGAGGGACCCCTAAGAACTCTGGAGGGAGGCCGGCAAAGGGCTCTAGCCGAAAAGCACGGGGTGGCGTGACACCCAGAATCGGCAAAGATCTGAACTCAGATGATACGTCTAATAAGATTGATCAGCCAAAAAGGGCCGGAGAGGCTGAAGAAGGTAGAAGTATGGCCGGGAAGAACCGCAAGCGAGGACGGCTTGGCAAGTAATCATAGTTTCAGGTTGGAGTAATATGGCCTTTGAATGAATTATCGTGGGGGGTGTATTGAGGATGCTGTGCGTGTTATTTATCATCAGAGCCCCAGTGAAAGGGCTTATATTTTGAATCTTCCTTCGTTTCCTTGAGAATTATAGTTTAGATAGGAGAGATGCAAGGCTCATCATATTTAATGTTTGATACTTGGTTTATTTTGTTGGCCTATGTATGGTCCTGTGGGAATTAGCAGTAGATTATTATCAGGGGATTTGTTTTGCCTGTTTTTCAATATTGTTTGGTATCTCGTCTAGATATAAAGAAGATCTGAAGTGCTGCTAATGCCA

Network for GWHGAAEX009692

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.540
SRP064423	SRR2545915	Juvenile tuber	38.310
SRP108465	SRR5643513	five period of Gastrodia elata	37.380
	SRR5643514	five period of Gastrodia elata	34.370
	SRR5643515	five period of Gastrodia elata	31.510
	SRR5643524	five period of Gastrodia elata	34.720
	SRR5643525	five period of Gastrodia elata	48.500
	SRR5643528	five period of Gastrodia elata	42.620
	SRR5643658	five period of Gastrodia elata	43.240
	SRR5643659	five period of Gastrodia elata	40.540
	SRR5643660	five period of Gastrodia elata	40.990
	SRR5643661	five period of Gastrodia elata	39.610
	SRR5643662	five period of Gastrodia elata	37.280
	SRR5643663	five period of Gastrodia elata	36.890
	SRR5643664	five period of Gastrodia elata	39.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.710
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	37.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	40.820
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.260
SRP279888	Gastro	Gastrodia elata tuber	31.53
	Juven	Juvenile tuber	35.26
	Mother_Gastro	Mother tuber of Gastrodia elata	32.63
	Mother_Juven	Mother tuber of Juvenile	30.20