Detail information of GWHGAAEX009694/evm.TU.scaffold_253.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530780195|ref|YP_008432000.1| | 2.00E-16 | translation initiation factor IF-5A [Thermofilum sp. 1910b] |
| KOG | KOG3271 | 1.00E-96 | Translation initiation factor 5A (eIF-5A) |
| nr | gi|747073995|ref|XP_011083979.1| | 1.23E-104 | PREDICTED: eukaryotic translation initiation factor 5A-2 [Sesamum indicum] |
| Swissprot | tr|P24922|IF5A2_NICPL | 1.00E-104 | Eukaryotic translation initiation factor 5A-2 |
| trEMBL | tr|D6N3G5|D6N3G5_GOSHI | 2.00E-104 | Eukaryotic translation initiation factor 5A {ECO:0000313|EMBL:ADG27839.1} |
| TAIR | AT1G13950 | 1.00E-96 | eukaryotic elongation factor 5A-1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000249 | 594907 | 602887 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009694
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01287.19 | eIF-5a | 85 | 154 | 9.10E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045901 | Biological Process | positive regulation of translational elongation |
| GO:0045905 | Biological Process | positive regulation of translational termination |
| GO:0006452 | Biological Process | translational frameshifting |
| GO:0003746 | Molecular Function | translation elongation factor activity |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0043022 | Molecular Function | ribosome binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 238.020 |
| SRR2545915 | Juvenile tuber | 364.270 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 424.910 |
| SRR5643514 | five period of Gastrodia elata | 495.280 | |
| SRR5643515 | five period of Gastrodia elata | 404.800 | |
| SRR5643524 | five period of Gastrodia elata | 493.730 | |
| SRR5643525 | five period of Gastrodia elata | 191.150 | |
| SRR5643528 | five period of Gastrodia elata | 195.290 | |
| SRR5643658 | five period of Gastrodia elata | 171.680 | |
| SRR5643659 | five period of Gastrodia elata | 255.320 | |
| SRR5643660 | five period of Gastrodia elata | 208.060 | |
| SRR5643661 | five period of Gastrodia elata | 234.990 | |
| SRR5643662 | five period of Gastrodia elata | 217.490 | |
| SRR5643663 | five period of Gastrodia elata | 228.900 | |
| SRR5643664 | five period of Gastrodia elata | 203.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 315.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 404.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 356.030 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 300.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 238.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 228.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 279.410 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 254.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 374.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 324.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 415.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 415.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 265.11 |
| Juven | Juvenile tuber | 356.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 169.02 | |
| Mother_Juven | Mother tuber of Juvenile | 237.97 |