Gene detail

Detail information of GWHGAAEX009697/evm.TU.scaffold_254.3

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108760712\|ref\|YP_634045.1\|	1.00E-72	histone deacetylase [Myxococcus xanthus DK 1622]
KOG	KOG1343	0	Histone deacetylase complex, catalytic component HDA1
nr	gi\|743866438\|ref\|XP_010905062.1\|	0	PREDICTED: histone deacetylase 15-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q8GXJ1\|HDA15_ARATH	0	Histone deacetylase 15
trEMBL	tr\|M0TS29\|M0TS29_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P20260_001}
TAIR	AT3G18520	0	histone deacetylase 15

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000254	65579	153398	+

Transcript Sequence
>GWHTAAEX009697 CCGAACAAGTTTTTAACTAAAACAGGAAAACTCGCATATGGGAGGTTAGAGCAATAATATCTTCTTAATTCTCTCAAATTTAGGAGAGTTCACTGTGGCATTTACTTCGTGTAAATTGAAATATGGGAGATAATAGAAAATGCTCGTGGAAAGAAGAAAAACCAAAATCCCGAGCACGAGCTCCTCGGTCTTCTCCTTCACTGTTACGAGCTCCTCGGTCTTCTCTTTCACTGTTCTCACCGGAAGCGATTCTTCTCCTCTTTCCGGTTCACGCTAGGCTTGCTAGGAGAGGAGTGTTGCATGAAAGAAGATCGTAGAGCTCTCCAAGATAAGGAGAGGGGTTGCACAGTTTATCACACAGTTCTGCATTTATGTTATTTTTATGTGAGTTGCCACCTCTGTTGTGGTGTTATTAGAACCTATCAGAACTGATCTGCCGCTTTATGATTATGGAATCTGAGTCTTATTGTTTGTAAACGATAAATATTTTTTAGTGAACCACAGTGTGACTGGCTTTAAAAATATTGCATAACTTGAATGAATGGGCGCAACTTTGTGGTGCAAAAAAAATTGTATGGAGGAAAAAGTTGTCCATTGCAGTTCCCTTACCATTGAAGCAAATGCAAGGAGCAATGGTGCTGCTGGTTGTTATTTGGGTGTTTCTAGTGCTGCACAATTTGCAATATATAACAGGGAGCAAAAGGGAAATACATTTGATGATATCCATCACCTGGAAAATAATGATGATGATGATGACTATGATGAGGATGATGATAGTGATTGGGAACCAATTAATCATCTAGTCCGAAAGAAATGGTTTTGCAGCAACTGTACTATGCCAAATTTAGATGATGCTTATCACTGTGATGTTTGTGGAGAACATAAGGAGTCCGAGGTCTTTGATCATGAGCTTTTCAAGCGTTCTTTTGGTGATGGAAAGTGGAATTCCATTTATGCTGAATCACTTCAAAGGTTTCAAGGTTCATCTTGCAAATCATGTACAGCCTTGGGTTTCGATCAAAGAATGTTGCTTCATTATGAGGTTTTAATTAAGTCACATCCACATCCAGAGAGGCCTGACCGCCTTAAAGCCATTGCTGCCAGTTTTGCTGCTGCAGGAATATTTCCTGGAAAATGCATACTGATACCTGTCAGAGAAATCTGCCCAGAGGAACTCCAGAAGGTACATTCTTCGGATCATATTGAAGCTGTTCAACAATCAAGCAGTTTACTCTCAAGGTACTTTACCCCAGACACATATGCCAATCAACACTCAGCATTGACTGCTAGAATCGCTGCTGGATTGTGTGCTGATCTTGCTATTTTCATCATGTCTGGGAAGACTAGGAATGGTTTTGCCCTGATTAGGCCTCCTGGGCATCATGCAGGTGTAAAACAAGCCATGGGCTTTTGCCTTCACAATAATGCTGCTGTTGCTGCACTAGCAGCCCAGACTGCTGGAGCCAAGAGAGTCTTAATTGTTGACTGGGATGTGCACCATGGTAATGGCACTCAAGAAATATTTGATGGAAATAGATCGGTTTTGTACATTTCTTTGCACCGGCATGAGAACGGGAGATTTTATCCAGGAACAGGCGCTGCTAATGAGGTAGGTGTTATGGATGGTAAGGGATACTCTGTTAATATACCATGGAACCGAGGAGGTATTGGAGATAAGGATTACATATTTGCTTTTCAGCATGTTGTTCTTCCTATAGCTTCAGAATTTGCACCGGATATTACTATAATTTCAGCAGGTTTTGATGCCGCAAGAGGTGATCCACTTGGTGGTTGTGATGTGACCCCAGCAGGGTATGCACAGATGACGCATATGCTGTCTTCCCTGTCACAAGGAAAGTTGCTGGTGATACTTGAGGGAGGTTACAATCTACGCTCGATAGCATCTTCAGCTACTGCAGTTGTCAAGGTGTTACTAGGTGAGAATCCTAGATATGATATGTGTAATGTCAAGCCTTCGGAAGCTGGCCTTGAAACTGTCTTACAGGTTCTGAAAATTCAGTTGAAATTTTGGCCCAATCTTGTAATAAATTTCAAGACTTTGCGTGCACAATGGAAAATGATTGCGTCAAACAAAAGGAAAGTTGGGAAGAGGAGATTATATGTAGGGCCAATTTGGTGGAGATGGGGAGCCAAAAGCTTTGTGTATGAATTACTTTATGGGCGGCGAAGGCGGAGGAGAAGGCGGCGTTCCAAGCAGATCCATTAGGGGGACTGCCGAGATGATCACTCAGATTGAGGTTTTTTTGTTGTATTGAATCTGAAGTTACTATATTCTGATTCATTTCTGTAATGGTTGAACTGTGCTCAAGAATCTTTTGAGTCCCTGTACTGTTGATCATGTCTATAGCATGCACCCCTTGTTTCTGTGATAATTTAATTGACACCTGCCTTTGTGATGGCATAGCTAAAGTATTGTTAGCCACAAATTTGTAAGATTGTTCTTGTTGGATCTTTCAAACAATTATTTTGCATGTAATTTTTTGCGAGTTTTGCTACATAAACCAATAAAAATAGATTAATGCTGGTATTTGATGCCGCATCCTACTTCTAA

Network for GWHGAAEX009697

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00850.18	Hist_deacetyl	175	464	2.20E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	59.060
SRP064423	SRR2545915	Juvenile tuber	98.930
SRP108465	SRR5643513	five period of Gastrodia elata	37.640
	SRR5643514	five period of Gastrodia elata	34.660
	SRR5643515	five period of Gastrodia elata	36.040
	SRR5643524	five period of Gastrodia elata	34.320
	SRR5643525	five period of Gastrodia elata	33.600
	SRR5643528	five period of Gastrodia elata	25.380
	SRR5643658	five period of Gastrodia elata	29.500
	SRR5643659	five period of Gastrodia elata	51.920
	SRR5643660	five period of Gastrodia elata	52.550
	SRR5643661	five period of Gastrodia elata	47.840
	SRR5643662	five period of Gastrodia elata	50.400
	SRR5643663	five period of Gastrodia elata	56.250
	SRR5643664	five period of Gastrodia elata	57.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	74.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	50.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	69.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	99.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	104.940
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	121.910
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	97.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	97.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	65.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	43.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	43.010
SRP279888	Gastro	Gastrodia elata tuber	117.39
	Juven	Juvenile tuber	82.10
	Mother_Gastro	Mother tuber of Gastrodia elata	46.16
	Mother_Juven	Mother tuber of Juvenile	66.32