Gene detail

Detail information of GWHGAAEX009698/evm.TU.scaffold_254.4

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1863	Ubiquitin carboxyl-terminal hydrolase
nr	gi\|743775036\|ref\|XP_010917891.1\|	PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X6 [Elaeis guineensis]
Swissprot	tr\|Q9FPT1\|UBP12_ARATH	Ubiquitin carboxyl-terminal hydrolase 12
trEMBL	tr\|A0A067JDI6\|A0A067JDI6_JATCU	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR	AT5G06600	ubiquitin-specific protease 12

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000254	162917	190276	+

Transcript Sequence
>GWHTAAEX009698 ATGATATTAAAGATCTCCAAATGTGTAAGCAAAGGAGCATTCTATAGGAGGAGCCCATTCGCACTTCTTATTGGGTCTCTCCATCGCGTTCTCCCCAACTCTCTCACTTCCTCGTCAGACGCCGTCGTCGGAGACGACCGCGCCTTTCTGCCGTCTGTTTCATCACCAATGACTATGATGACTCCACCGCCGCTCGAGCCGGAGGATGACGAGGTGCTTGTTCCCCACTCGGAGGTCACTGATGGCCCCCAGCCGATGGAAGTGGCACATTCTGAGGCTCCTACTACGGCCGAAAGCCAGCCGGTGGAGGATCCTCCCACCTCCAGGTTCACATGGACGATTGAAAATTTCTCGAGGCTTAACATTAAGAAGTTATACTCGGATGTTTTCATTGTTGGAGGTTACAAATGGAGGATCTTGATCTTTCCCAAAGGGAACAATGTGGATCACTTGTCCATGTATCTTGATGTTGCTGATTCTAGCACTCTGCCTTATGGTTGGAGTAGGAATGCTCAGTTCAGCCTGGCTGTTTGCAACCAAATTCACAGCAAGTACACTATAAGAAAAGACACGCAGCACCAATTTAACTCCCGAGAAAGTGATTGGGGTTTCACATCATTTATGCCACTCGGTGATCTGTATGACCCAAGCAGAGGATATATTGCCAATGATACATGCATAATAGAAGCTGAGGTTGCAGTTAGGAGAGTAATTGATTATTGGAATTATGATTCAAAAAAAGAAACAGGCTATGTTGGTCTTAAGAATCAGGGGGCTACTTGCTATATGAACTCTCTTCTTCAGACTTTGTACCATATTCCTTATTTCAGGAAGGCTGTGTACCATATGCCCACTACTGAGAATGATAATCCTTCTGCAAGCATTCCTTTAGCACTGCAGAGCTTGTTTTATAAGCTTCAGTACAGTGACAGTAGTGTTGCTACAAAGGAGCTGACCAAGTCATTCGGATGGGACATGTATGATTCTTTTATGCAGCATGATGTTCAAGAACTTAACCGAGTTCTTTGTGAGAAGTTGGAAGACAAAATGAAGGGAACTGTTGTGGAAGGAGCAATTCAACAATTGTTTGAGGGACATCATATGAATTTTATTGAATGCATTAATGTAGATTATAAGTCAAGCAGAAAGGAATCATATTATGACCTTCAGCTAGATGTGAAAGGTTGCAAGGATGTGTATGCTTCTTTTGATAAATATGTTGAAGTGGAACGTCTTGAAGGAGATAACAAATACCATGCTGAACAATACGGTTTACAGGATGCAAAGAAAGGAGTGCTTTTTATTGATTTTCCTCCTGTGCTGCAACTCCATCTAAAACGATTTGAATATGACTTCATGCGTGACACAATGGTGAAGATAAATGACCGATACGAGTTCCCTTTGCAATTAGACCTCGACAAAGATAATAGGAAGTACCTTTCTCATGATGCTGATTATTCTGTCCGCAACCTATATACACTACATAGTGTTCTTGTGCATAGTGGTGGTGTTCATGGTGGACATTACTATGCTTTCATCAGACCAACTCTCTTGGATCAATGGTATAAGTTTGATGATGAGCGAGTAACAAAAGAAGATGTGAAAAGGGCGCTAGAGGATCAGTATGGAGGGGAAGAAGAGTTGCCACAGACAAATCCAGGGTTTAATAATACTCCATTTAAGTTTACTAAGTATTCAAATGCATATATGCTAGTTTACATCCGTGAGACGGACAGGGATAAGATAATTTGCAATGTAGACGAGAAGGATATTGCAGAACATCTTAGAATAAGATTGAAGAAAGAACAAGAGGAAAAGGACCACAAGAAAAAAGAGAAAGCAGAGGCCCACCTTTACACCATTATAAAGGTAGCTCGAGATGAAGATATTGCTCAACAGACTGGTAAAGATATATATTTTGACTTAGTTGATCATGACAAGGTTCACAGTTTCCGAATACAGAAGCAAATGCCTTTCAATCTTTTCAAGGATGAGGTAGCCAGGGAATTTGGTATCCCAGTTCAATGCCAGCGCTTTTGGTTGTGGGCTAAGCGACAGAACCATACATATCGTCCTAACAGACCATTGCATCCTCATGAGGAAGTGCAATCTGTTGGGCAGTTAAGAGAAGTATCAAATAAAGCTCACAATGCTGAACTAAGACTATTTTTGGAAGTGGAACTTGGACCGGAACTTTCTTCCCTTCCTCCACTAGACAAGACCAAGGAAGATATACTACTATTTTTCAAACTTTATGACCCTGAAAAAGAAGAGCTAAGATATGCTGGAAGGCTTTTTGTGAAAGCTTTAGGTAAACCAATGGAGATATTATCAAAATTAAATCAAATGGCTGGTTTTTCTCAAAATGAAGAGATTGAACTTTATGAGGAAATAAAGTTTGAACCGAGTGTAATGTGTGAACATATTGACAAGAAGCTATCTTTTCGGTCTAGCCAGTTGGAAGATGGTGATATTGTTTGTTATCAAAAAACTCCTACTCAAGAAAGCGAAGAGAAATTCCGTTACCCGGATGTTCCATCTTATTTGGAGTATGTCCATAACCGGCAGGTGGTTCATTTTCGATCATTGGATAGGCCAAAAGAAGATGATTTTAGTTTGGAATTGTCAAAGCTTTTCACTTATGATGATGTTGTAGAAAGACTTGCTCAACATATTGGTCTTGAAGACTCGTCTAAGATACGGTTGACATCTCACAATTGCTATTCTCAGCAACCTAAACCTCAGCCAATCAAATATCGTGGTGTGGAGCATCTGTCGGACATGCTTGTCCATTACAACCAGACTTCAGACATATTGTACTATGAAGTTTTGGACATTCCTCTTCCAGAACTGCAAGGTTTAAAAACTCTTAAAGTTGCATTTCATCATGCCATGAAGGATGAGGTAGTTATTCACCACATCAGGCTACCCAAAAGTAGTTCTGTGGCTGATGTGATTAATGACTTGAAAACAAAGGTTGAGCTGTCTCATACTAATGCAGAACTCAGATTACTTGAGGTTTTCTATCACAAAATATACAAGATATTTCCGCCTGCTGAGAAGATAGAAAACATAAATGATCAATACTGGACCCTGCGTGCTGAAGAGATTCCAGAAGAAGAGAAAAATCTTTGTCCACGTGATCGCTTGATTCATGTTTATCACTTTATGAAGGATCCTCAAAATCAAATGCAAGTTCAGAATTTTGGGGAGCCTTTCTTCTTGGTTATTCATGATGATGAGACAGTAGCTGATATTAAACTGCGCATTCAGAAGAAGCTGCAAGTTACTGACGAGGAGTTTTTTAAGTGGAAATTTGCGATTTTGTCACTCGGACGTCCTGAATACTTGCACGATTCTGATATTATTGCTGGCCGATTTCAGAGGAGAGATGTTTATGGAGCTTGGGAGCAATATCTTGGTCTGGAACATTCAGACACCACGCCTAAACGGGCCTATACAACTAACCAGATGCCGGCTGCTTTTGGCTTCTCTCATTGCATGCCACCGGCAAAGGTCTAACAAGATATCTTTGCCGTGCCACAAGCAAAGATCGGCATTAAAAAGTTCTTAATTTCACTTATTGAAGCATATAATATTCTCAGTATTAGTAGGTCAAGCAGTACTTCGCATACATTTTTGTACATACTTTTTTGGAAATTTCTGCAGCATTGTCCTCAGTATTAGTAGGTCAAGCAGTACTTCGCATACATTTTTGTACAGATTTTCTTGGAAATTTCTGCAGCATTGT

Network for GWHGAAEX009698

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00917.25	MATH	114	234	3.40E-19
PF00443.28	UCH	252	573	2.40E-45
PF12436.7	USP7_ICP0_bdg	677	929	8.30E-75
PF14533.5	USP7_C2	939	1149	3.10E-55

Protein Sequence

>GWHPAAEX009698
MILKISKCVSKGAFYRRSPFALLIGSLHRVLPNSLTSSSDAVVGDDRAFLPSVSSPMTMMTPPPLEPEDDEVLVPHSEVTDGPQPMEVAHSEAPTTAESQPVEDPPTSRFTWTIENFSRLNIKKLYSDVFIVGGYKWRILIFPKGNNVDHLSMYLDVADSSTLPYGWSRNAQFSLAVCNQIHSKYTIRKDTQHQFNSRESDWGFTSFMPLGDLYDPSRGYIANDTCIIEAEVAVRRVIDYWNYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDNPSASIPLALQSLFYKLQYSDSSVATKELTKSFGWDMYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGAIQQLFEGHHMNFIECINVDYKSSRKESYYDLQLDVKGCKDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLHLKRFEYDFMRDTMVKINDRYEFPLQLDLDKDNRKYLSHDADYSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLLDQWYKFDDERVTKEDVKRALEDQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRETDRDKIICNVDEKDIAEHLRIRLKKEQEEKDHKKKEKAEAHLYTIIKVARDEDIAQQTGKDIYFDLVDHDKVHSFRIQKQMPFNLFKDEVAREFGIPVQCQRFWLWAKRQNHTYRPNRPLHPHEEVQSVGQLREVSNKAHNAELRLFLEVELGPELSSLPPLDKTKEDILLFFKLYDPEKEELRYAGRLFVKALGKPMEILSKLNQMAGFSQNEEIELYEEIKFEPSVMCEHIDKKLSFRSSQLEDGDIVCYQKTPTQESEEKFRYPDVPSYLEYVHNRQVVHFRSLDRPKEDDFSLELSKLFTYDDVVERLAQHIGLEDSSKIRLTSHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHAMKDEVVIHHIRLPKSSSVADVINDLKTKVELSHTNAELRLLEVFYHKIYKIFPPAEKIENINDQYWTLRAEEIPEEEKNLCPRDRLIHVYHFMKDPQNQMQVQNFGEPFFLVIHDDETVADIKLRIQKKLQVTDEEFFKWKFAILSLGRPEYLHDSDIIAGRFQRRDVYGAWEQYLGLEHSDTTPKRAYTTNQMPAAFGFSHCMPPAKV

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
K11838	USP7, UBP15	FoxO signaling pathway	map04068

Gene Ontology

GO term	Ontology	Name
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0016579	Biological Process	protein deubiquitination
GO:0036459	Molecular Function	thiol-dependent ubiquitinyl hydrolase activity
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	49.140
SRP064423	SRR2545915	Juvenile tuber	46.580
SRP108465	SRR5643513	five period of Gastrodia elata	40.180
	SRR5643514	five period of Gastrodia elata	38.750
	SRR5643515	five period of Gastrodia elata	38.400
	SRR5643524	five period of Gastrodia elata	35.800
	SRR5643525	five period of Gastrodia elata	30.380
	SRR5643528	five period of Gastrodia elata	35.160
	SRR5643658	five period of Gastrodia elata	31.240
	SRR5643659	five period of Gastrodia elata	38.850
	SRR5643660	five period of Gastrodia elata	40.170
	SRR5643661	five period of Gastrodia elata	39.010
	SRR5643662	five period of Gastrodia elata	40.780
	SRR5643663	five period of Gastrodia elata	39.330
	SRR5643664	five period of Gastrodia elata	39.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	40.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.620
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.230
SRP279888	Gastro	Gastrodia elata tuber	48.92
	Juven	Juvenile tuber	62.18
	Mother_Gastro	Mother tuber of Gastrodia elata	35.14
	Mother_Juven	Mother tuber of Juvenile	63.44