Detail information of GWHGAAEX009699/evm.TU.scaffold_254.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428771702|ref|YP_007163492.1|1.00E-11aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [Cyanobacterium aponinum PCC 10605]
KOGKOG22714.00E-11Nuclear pore complex component (sc Nup85)
nrgi|695020755|ref|XP_009397441.1|1.10E-44PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Musa acuminata subsp. malaccensis]
Swissprottr|Q7XZZ1|GATC_ORYSJ1.00E-41Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03149} (Precursor)
trEMBLtr|M0STP1|M0STP1_MUSAM2.00E-44Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial {ECO:0000256|HAMAP-Rule:MF_03149}
TAIRAT4G329104.00E-11Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000254210908221462-
Transcript Sequence

Network for GWHGAAEX009699

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02686.14Glu-tRNAGln541265.20E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02435gatC, GATC Metabolic pathways map01100
Aminoacyl-tRNA biosynthesismap00970

Gene Ontology

GO term OntologyName
GO:0006450Biological Processregulation of translational fidelity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.710
SRR2545915Juvenile tuber16.670
SRP108465SRR5643513five period of Gastrodia elata22.940
SRR5643514five period of Gastrodia elata34.240
SRR5643515five period of Gastrodia elata25.870
SRR5643524five period of Gastrodia elata35.960
SRR5643525five period of Gastrodia elata21.450
SRR5643528five period of Gastrodia elata24.510
SRR5643658five period of Gastrodia elata27.970
SRR5643659five period of Gastrodia elata19.720
SRR5643660five period of Gastrodia elata20.650
SRR5643661five period of Gastrodia elata23.510
SRR5643662five period of Gastrodia elata18.500
SRR5643663five period of Gastrodia elata16.130
SRR5643664five period of Gastrodia elata21.060
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.280
SRR6049655Rhizomagastrodiae_C368-T10_good_122.060
SRR6049656Rhizomagastrodiae_C368-T07_good_129.720
SRR6049657Rhizomagastrodiae_C368-T07_good_123.840
SRR6049658Rhizomagastrodiae_C368-T04_good_131.580
SRR6049659Rhizomagastrodiae_C368-T04_good_131.050
SRR6049660Rhizomagastrodiae_C368-T01_good_126.630
SRR6049661Rhizomagastrodiae_C368-T04_good_127.350
SRR6049662Rhizomagastrodiae_C368-T01_good_124.670
SRR6049663Rhizomagastrodiae_C368-T01_good_130.950
SRR6049664Rhizomagastrodiae_C368-T10_good_134.210
SRR6049665Rhizomagastrodiae_C368-T10_good_134.210
SRP279888GastroGastrodia elata tuber 29.04
JuvenJuvenile tuber25.55
Mother_GastroMother tuber of Gastrodia elata 29.79
Mother_JuvenMother tuber of Juvenile 17.78