Detail information of GWHGAAEX009706/evm.TU.scaffold_254.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2538 | 2.00E-81 | Origin recognition complex, subunit 3 |
| nr | gi|743775601|ref|XP_010918184.1| | 0 | PREDICTED: origin recognition complex subunit 3 [Elaeis guineensis] |
| Swissprot | tr|Q0IY07|ORC3_ORYSJ | 0 | Origin of replication complex subunit 3 {ECO:0000303|PubMed:15939553} |
| trEMBL | tr|K4A6E2|K4A6E2_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si034446m} |
| TAIR | AT5G16690 | 2.00E-81 | origin recognition complex subunit 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000254 | 506235 | 558688 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009706
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07034.10 | ORC3_N | 69 | 207 | 2.80E-12 |
| PF07034.10 | ORC3_N | 227 | 359 | 4.10E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02605 | ORC3 | Cell cycle | map04110 |
| Cell cycle - yeast | map04111 | ||
| Meiosis - yeast | map04113 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005664 | Cellular Component | nuclear origin of replication recognition complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.140 |
| SRR2545915 | Juvenile tuber | 10.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.730 |
| SRR5643514 | five period of Gastrodia elata | 7.250 | |
| SRR5643515 | five period of Gastrodia elata | 7.030 | |
| SRR5643524 | five period of Gastrodia elata | 6.890 | |
| SRR5643525 | five period of Gastrodia elata | 2.600 | |
| SRR5643528 | five period of Gastrodia elata | 1.700 | |
| SRR5643658 | five period of Gastrodia elata | 2.220 | |
| SRR5643659 | five period of Gastrodia elata | 13.380 | |
| SRR5643660 | five period of Gastrodia elata | 13.700 | |
| SRR5643661 | five period of Gastrodia elata | 13.750 | |
| SRR5643662 | five period of Gastrodia elata | 10.270 | |
| SRR5643663 | five period of Gastrodia elata | 12.740 | |
| SRR5643664 | five period of Gastrodia elata | 11.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.31 |
| Juven | Juvenile tuber | 12.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.15 | |
| Mother_Juven | Mother tuber of Juvenile | 8.57 |