Detail information of GWHGAAEX009707/evm.TU.scaffold_254.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-113 | FOG: PPR repeat |
| nr | gi|672139617|ref|XP_008793596.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LFI1|PP280_ARATH | 1.00E-113 | Pentatricopeptide repeat-containing protein At3g53360, mitochondrial (Precursor) |
| trEMBL | tr|A3BBZ3|A3BBZ3_ORYSJ | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:EAZ37082.1} |
| TAIR | AT4G13650 | 1.00E-113 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000254 | 578764 | 582917 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009707
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 73 | 99 | 0.3 |
| PF01535.19 | PPR | 147 | 172 | 0.0014 |
| PF01535.19 | PPR | 277 | 306 | 0.00085 |
| PF01535.19 | PPR | 350 | 370 | 0.088 |
| PF01535.19 | PPR | 378 | 407 | 0.00019 |
| PF01535.19 | PPR | 451 | 476 | 0.65 |
| PF13041.5 | PPR_2 | 477 | 524 | 1.10E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.210 |
| SRR2545915 | Juvenile tuber | 1.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.060 |
| SRR5643514 | five period of Gastrodia elata | 1.100 | |
| SRR5643515 | five period of Gastrodia elata | 0.910 | |
| SRR5643524 | five period of Gastrodia elata | 0.850 | |
| SRR5643525 | five period of Gastrodia elata | 0.290 | |
| SRR5643528 | five period of Gastrodia elata | 0.200 | |
| SRR5643658 | five period of Gastrodia elata | 0.150 | |
| SRR5643659 | five period of Gastrodia elata | 1.830 | |
| SRR5643660 | five period of Gastrodia elata | 1.120 | |
| SRR5643661 | five period of Gastrodia elata | 1.540 | |
| SRR5643662 | five period of Gastrodia elata | 1.100 | |
| SRR5643663 | five period of Gastrodia elata | 1.180 | |
| SRR5643664 | five period of Gastrodia elata | 1.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.210 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.790 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.11 |
| Juven | Juvenile tuber | 2.82 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.48 | |
| Mother_Juven | Mother tuber of Juvenile | 0.98 |