Gene detail

Detail information of GWHGAAEX009708/CADD00758.1.gene

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0017	1.00E-24	FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
nr	gi\|658045400\|ref\|XP_008358376.1\|	2.27E-27	PREDICTED: uncharacterized protein LOC103422119 [Malus domestica]
Swissprot	tr\|P10978\|POLX_TOBAC	2.00E-19	Endonuclease
trEMBL	tr\|A5AS82\|A5AS82_VITVI	2.00E-26	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN67073.1}
TAIR	AT4G27200	1.00E-24	transposable element gene

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000254	583487	587984	+

Transcript Sequence
>GWHTAAEX009708 TATTATTCCCTCGTAACAAACCACACCTATATATACGATATTATTCTCTCCCCTTCTGATTTCTTTCATGGCATCAGAGCATATCTAATTCCTCCTACCTCTCAATTCGAGCAAACGTCTCGATCAATCTCCACCTCCCTCCCGTAGCATCATTCTCCTGTCTATCCGAGCGTGATACGACATTTAGTCCTCGATCAATCTCTTCAATACCACCTGCAAAGCCGTCCCTGGCTTCGATCCTGAGCTCGATCAATGTCAATGGAGTCGACGAACACCAACTCTCAATCTGGCGACGGCTCCGGCTCTCGTAGTCAAGACACCTCCTCAGAAGATATGCAAGATCTTAAATTCCTGATGACCAATATCAAGAATCTCATCCACACTTCATTATCCTCTGAGACATACTCAATGTGGTGCGCTCAAATTCTACAGCTATTCAAGGCAAACAACTTATATGGTGATCTAGACGGATAAACATGCTGGCATCACTCTACCGCGGCTTCTCCTCAACCGCTCTCACTATTCCATTACCGTTTCCGAGGTTGCTGTAAACCAATCCAAGGAAGGGGACCTCAGCAATTCAGAGGTGGTGTGCATAACACATTCAAAGCAGCATACATTGAATGGTAGATCTGCAATAAGCCAAGACACTCGGCTAAACATGCTGGCGTCATCTCGACACAACCTACAACCAACAGAATTCACCTCACTATCCACCAACAACCTTCCACATAGGTGGCACCACTAATCCCAGCTGGTTCCTCGACTCCAGAGCATCTAATCACATTACCAATGATCTAAACAACATGTCCATCATCTAACCATATGAAGGCAATGATCGAGTCACCGTTGGAAGTTGCCCAACACTCCATATCTCTAATACAGGAAAAGGGATCCTACCTACACATTCTTCATTATAAAGAACCTTTACGCGAGCACTCCTCTTCTTAAGGGTCCATCATCTAACCATATGAAGGCAATGATCGAGCTCTACACCATGCATCCTTTCCCAGAACCTTATTCTAAACTAGCTCTTAGCTCATCCTCAAGATCAACCAACCTTCCATGCCACCAACAATTAGGACATCCAAGCATAGATGTTCATACGGCGCAATTTCAGCTGCACTTCCTTGCTTTCTTGCATTTTGGCCAAACTCCATAAACTTTCTTTTCCAAAATTGAGTACACGAACTTATGCTTTATTTGAGCTCATCCATACTGATGTTGGGATCCTACCCCAACTTTTTCTAATGTGGTTACAAAGTTTAATTGATATTTGTGAATGATTGTTTTTGTTTCATATGGCTATTCCCTCTCAAATATAAATCAGAAACTTTCACAAAAAATCATGTATCTCCACAAATTCATTCAATGACAATTTCAAAAACAAATCAAGATCCTAAGACCAGATGGAGGAGGGAAATATAATTCGAACTACTTTCACAAACTTCTCAAAAACTTAGGTATTCACCACCAAATTTCATGCCTCTAGGCCCCTCAACAAAACGGGGTGGCCAAGCAAAAACACGCCATATTCTTGAAGCCACCCAAACACTCCTTCAAACAACTAATCTTCATGCTGCATTTTGGGCTCATGCCACTCTCACCTCTACCTATTTTATCAATAGACTATCTTCCCCAAACAAAAAAATATCTCTCCCATCCAACTACTTCATAAACAAATCCCAACTTATACTCACGTACGAGTCTTTGAATGTCTCTGCTTTTCCCTTCTCTCTCACCAAAACCTCCAAACTACGCCCGCACTCTACCATACACATCTCTTTGATACTTCCCGAACCACAAAGGGTATCTATGTTAAAATTCAAAAACAGCAACATCTCTAATTTCTTGTCATGCCAAATTCAAAGAAAACACCTTCCCATACACCTCTTCCTCCATTCATTCTGAAACTAGCACTCCTTCGACAACTCTACAACTAATCCTTCCACATCATCATCCCCAATATTAAACCCCACCATTACATCAAATCCAGCTGCACCTCTTCCTAGTCACTGTATGCAAACATGCTCCAAAACCGGTACACTCAAACCCAAACAAATACTCAATATCCTCCACCCATCTTTTCCACCGAAAGATACCATCTTCTACACCGATGTAGCAACATAAAAACACTGGCAACAAGCTATGGAGGATGATTCCAGCCCTAACTGACCAACATACATGGACTCGCGTCCCACCTCATTCCCAACAAAATGTTCTTGGATGCGAGTGGGCATACCGTACAAAGCTCAAAAATGACACGGCACGCTACAAAGTTCAGTTAGTAACCCAAGGATACAACCCAAATTATGGCATTGACTATCTCGAAACCTTCAGCCTAGTGGCAAAAATACCAACCATAAGAGTCCTACTCACCGTCGCTATCCACCATCATTGGTCTGTCACTCAGTTGGTCTCCAATGCCTTCCTGCATGGGCAACTAAAGACAACAATTTACATGAAGCAACCAAAAGGGTTCGAGAACAGCCAATTCCTGATCCGTGTCTGTCTACTCCAGAAGGCCCTCTACGACCTCAAACAATCGCCACATGAATGGCACTACACCTCACCTCATTTCTATACAGCAATGGGTTCCATATACAAGCAAGGCTAATCCCTCTTTCCACATCCTCTACAGCAATACAACAGGTATCTACATCTTTATATACGCTGACAATCTGTCTATCATCGGACTAGACAAAGCTACTCTACGTTCCCTGATTGATCTACTCACTGAACGCTTTAAATGAAAAATCGGGGTACTTACACAAACTTTCTTGGAATCCAAATCACTCCTTATGCAAGTCTAACGCTCAGTCAAGCCCTCTATGCATTAGCCATTCTGAAAACCGCGAGGATGGAGTAATGCAACGCCGCAGTCACTCCCATCACCAACTCATTACCCAAACAACCAAACAATACCCCCTTCAGTTATCCAAAACTCTACAAGCAACTAACCGATTCTCTCCAATACCTCACCATCACCAGATCATATATATGCCTAGCTGTTAATAAAATCTGCCAACATATGCATCACCCCACTTAGCACATTTTGAGCAACTCAAAAGAATCCTATGATATCTCAAGAGCACCATCTCTCTAGGCATGCAAATTGTCCTTGGAGATATGCAACTTCGTGCCTATGCAGACTCCGATTGAACTGGCGACACAAAAGAAAGAAAATCAACTACCGAAAATTGCATATTTCTCAGTAACAATCTCATCTACTGGACTGCCAAAAAATAAAATGTAATTACTAGATCCTCCACAGAAGTAGAATACAGGGCTCTTGCAACCACTGCCACTGATATAATATGGCTACGGCGACTACTTGATGAGTTCAAACTTTTGCAACCACAACCAACTACTCTATAATGCAATAACCTCTCAGTCATTACACTTGCAAAGAATCCGATCTTTCATGCTCTAACAAAACATGTTATAGTGGGCTGCCAGTTCATCTGCGATTGTATCAACACACAAGAACTACAACTCCTACATTCTTACCGAGGATCAAGCAGCCGATCTACTCACCAAGCCCCTAACCACAGCTCAGTTCTGCAAGCTATGCTCCAAACTCAGCACCTCTATACCAGTGGATTGTTTGCGGGGGATAATAACAATCAAGACCGTCCATAACAAGCCCGTACTACTATTCCCATCACAGTCGTAGCCTCATAACAAACCACACCTATATATCGGGATGTATCTTACGGTTTCAAAACAAGAAATATATGTCATTGTTCTCTCTGCCGCATTATGCGTATTATTTTCCTTCTGATTTCTTTCAGTAATGTGCATAAACTAATGCTTATTTCTCACAGTAATATTCAGAAGGTGGTATAATGAATTCTTCCATTATCATTCAAGAACATTTAATTTGCTGAAATACTCAACTATGTTCAGTTGATCGATTATGTTATTTAATTTGTTCAATTTAATCTCTCAATTATATATTGTGTCAATTTAGTTTCCAAAGTGTTTCAAAAGGACGGGATTTGCAACAGAACCTTTTCACCTTAAGCTGATGAGAGCTAAGTGTAGATCTGAAGTATCAAACAGGCAAAAAATTGCAGCACACAAGAAACACAGCAGGCACATGCAAATGTTAGTCAAGACCAAGGAAACCTTTAAATTGTGCAAGTCATATAGCCTGGAACTGGTTTGAGGCCCTTGAAAAGCATGGCAAACTCCTTAAAACCCTCGTCACCGTTGGACTGCTCCCTAATCTCGTTCATTCTTGCACGTTGTATCCTGCTCTATATGCTTATTTGTTTTCTTCACAGCTTCCTGATTGGTGCTGAAGTACAATACAATCACCTGTAAAAACAGACTGATAATTCATATTCATGAGAAGCACACTGGTGATTTTCGCATTTGCGA

Network for GWHGAAEX009708

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX009708
YYSLVTNHTYIYDIILSPSDFFHGIRAYLIPPTSQFEQTSRSISTSLPHHSPVYPSVIRHLVLDQSLQYHLQSRPWLRSARSMSMESTNTNSQSGDGSGSRSQDTSSEDMQDLKFLMTNIKNLIHTSLSSETYSMWCAQILQLFKANNLYGDLDGTCWHHSTAASPQPLSLFHYRFRGCCKPIQGRGPQQFRGGVHNTFKAAYIEWICNKPRHSAKHAGVISTQPTTNRIHLTIHQQPSTVAPLIPAGSSTPEHLITLPMITTCPSSNHMKAMIESPLEVAQHSISLIQEKGSYLHILHYKEPLREHSSSGSIIPYEGNDRALHHASFPRTLFTSSLILKINQPSMPPTIRTSKHRCSYGAISAALPCFLAFWPNSINFLFQNVHELMLYLSSSILMLGSYPNFFCGYKVLIFVNDCFCFIWLFPLKYKSETFTKNHVSPQIHSMTISKTNQDPKTRWRREIFELLSQTSQKLRYSPPNFMPLGPSTKRGGQAKTRHILEATQTLLQTTNLHAAFWAHATLTSTYFINRLSSPNKKISLPSNYFINKSQLILTYESLNVSAFPFSLTKTSKLRPHSTIHISLILPEPQRVSMLKFKNSNISNFLSCQIQRKHLPIHLFLHSFNHSFDNSTTNPSTSSSPILNPTITSNPAAPLPSHCMQTCSKTGTLKPKQILNILHPSFPPKDTIFYTDVATKHWQQAMEDDSSPNPTYMDSRPTSFPTKCSWMRVGIPYKAQKHGTLQSSVSNPRIQPKLWHLSRNLQPSGKNTNHKSPTHRRYPPSLVCHSVGLQCLPAWATKDNNLHEATKRVREQPIPDPCLSTPEGPLRPQTIATMALHLTSFLYSNGFHIQARLIPLSTSSTAIQQVSTSLYTLTICLSSDTKLLYVPLIYSLNALNEKSGYLHKLSWNPNHSLCKSNAQSSPLCISHSENREDGVMQRRSHSHHQLITQTTKQYPLQLSKTLQATNRFSPIPHHHQIIYMPSCNLPTYASPHLAHFEQLKRILYLKSTISLGMQIVLGDMQLRAYADSDTGDTKERKSTTENCIFLSNNLIYWTAKKNVITRSSTEVEYRALATTATDIIWLRRLLDEFKLLQPQPTTLCNNLSVITLAKNPIFHALTKHVIVGCQFICDCINTQELQLLHSYRGSSSRSTHQAPNHSSVLQAMLQTQHLYTSGLFAGDNNNQDRPQARTTIPITVVASQTTPIYRDVSYGFKTRNICHCSLCRIMRIIFLLISFSNVHKLMLISHSNIQKVVILPLSFKNIFAEILNYVQLIDYVIFVQFNLSIIYCVNLVSKVFQKDGICNRTFSPADESVISIKQAKNCSTQETQQAHANVSQDQGNLIVQVIPGTGLRPLKSMANSLKPSSPLDCSLISFILARCILLYMLICFLHSFLIGAEVQYNHLKQTDNSYSEAHWFSHLR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.780
SRP064423	SRR2545915	Juvenile tuber	0.860
SRP108465	SRR5643513	five period of Gastrodia elata	0.590
	SRR5643514	five period of Gastrodia elata	0.800
	SRR5643515	five period of Gastrodia elata	0.720
	SRR5643524	five period of Gastrodia elata	0.710
	SRR5643525	five period of Gastrodia elata	0.380
	SRR5643528	five period of Gastrodia elata	0.290
	SRR5643658	five period of Gastrodia elata	0.270
	SRR5643659	five period of Gastrodia elata	0.590
	SRR5643660	five period of Gastrodia elata	0.880
	SRR5643661	five period of Gastrodia elata	0.760
	SRR5643662	five period of Gastrodia elata	0.610
	SRR5643663	five period of Gastrodia elata	1.010
	SRR5643664	five period of Gastrodia elata	0.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.710
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.540
SRP279888	Gastro	Gastrodia elata tuber	1.45
	Juven	Juvenile tuber	1.14
	Mother_Gastro	Mother tuber of Gastrodia elata	0.43
	Mother_Juven	Mother tuber of Juvenile	0.29