Detail information of GWHGAAEX009712/evm.TU.scaffold_255.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502235|ref|YP_001957952.1| | 4.00E-07 | hypothetical protein Aasi_0852 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0167 | 0 | FOG: Armadillo/beta-catenin-like repeats |
| nr | gi|672110279|ref|XP_008794462.1| | 0 | PREDICTED: U-box domain-containing protein 44-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SFX2|PUB43_ARATH | 0 | U-box domain-containing protein 43 |
| trEMBL | tr|B9NDM5|B9NDM5_POPTR | 0 | Armadillo/beta-catenin repeat family protein {ECO:0000313|EMBL:EEE81184.2} |
| TAIR | AT1G76390 | 0 | ARM repeat superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000258 | 236098 | 262396 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009712
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 38 | 112 | 8.20E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 46.260 |
| SRR2545915 | Juvenile tuber | 43.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.420 |
| SRR5643514 | five period of Gastrodia elata | 19.460 | |
| SRR5643515 | five period of Gastrodia elata | 21.630 | |
| SRR5643524 | five period of Gastrodia elata | 20.070 | |
| SRR5643525 | five period of Gastrodia elata | 21.880 | |
| SRR5643528 | five period of Gastrodia elata | 19.390 | |
| SRR5643658 | five period of Gastrodia elata | 24.350 | |
| SRR5643659 | five period of Gastrodia elata | 25.940 | |
| SRR5643660 | five period of Gastrodia elata | 28.690 | |
| SRR5643661 | five period of Gastrodia elata | 24.830 | |
| SRR5643662 | five period of Gastrodia elata | 26.590 | |
| SRR5643663 | five period of Gastrodia elata | 23.690 | |
| SRR5643664 | five period of Gastrodia elata | 31.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.320 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 31.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 41.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 49.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 38.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 37.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 33.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 36.85 |
| Juven | Juvenile tuber | 37.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 30.90 | |
| Mother_Juven | Mother tuber of Juvenile | 40.01 |