Detail information of GWHGAAEX009716/evm.TU.scaffold_255.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336178998|ref|YP_004584373.1| | 1.00E-12 | serine/threonine protein kinase with PASTA sensor(s) [Frankia symbiont of Datisca glomerata] |
| KOG | KOG1290 | 0 | Serine/threonine protein kinase |
| nr | gi|695026204|ref|XP_009400386.1| | 0 | PREDICTED: SRSF protein kinase 3-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P51566|AFC1_ARATH | 7.00E-45 | Serine/threonine-protein kinase AFC1 |
| trEMBL | tr|B9NAS8|B9NAS8_POPTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERP54585.1} |
| TAIR | AT4G35500 | 0 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000258 | 362501 | 384407 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009716
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 38 | 178 | 3.20E-20 |
| PF00069.24 | Pkinase | 254 | 414 | 2.80E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | CMGC_SRPK |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.790 |
| SRR2545915 | Juvenile tuber | 23.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.520 |
| SRR5643514 | five period of Gastrodia elata | 24.770 | |
| SRR5643515 | five period of Gastrodia elata | 26.200 | |
| SRR5643524 | five period of Gastrodia elata | 25.220 | |
| SRR5643525 | five period of Gastrodia elata | 26.540 | |
| SRR5643528 | five period of Gastrodia elata | 30.160 | |
| SRR5643658 | five period of Gastrodia elata | 29.960 | |
| SRR5643659 | five period of Gastrodia elata | 15.810 | |
| SRR5643660 | five period of Gastrodia elata | 17.870 | |
| SRR5643661 | five period of Gastrodia elata | 15.800 | |
| SRR5643662 | five period of Gastrodia elata | 12.260 | |
| SRR5643663 | five period of Gastrodia elata | 16.180 | |
| SRR5643664 | five period of Gastrodia elata | 16.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 39.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 29.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.610 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 26.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.99 |
| Juven | Juvenile tuber | 27.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 50.21 | |
| Mother_Juven | Mother tuber of Juvenile | 64.98 |