Detail information of GWHGAAEX009718/evm.TU.scaffold_255.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG31722.00E-69Small nuclear ribonucleoprotein Sm D3
nrgi|255539216|ref|XP_002510673.1|1.07E-84small nuclear ribonucleoprotein, putative [Ricinus communis]
Swissprottr|Q43582|LSM4_TOBAC6.00E-14Probable U6 snRNA-associated Sm-like protein LSm4
trEMBLtr|B9R8N0|B9R8N0_RICCO4.00E-85Small nuclear ribonucleoprotein, putative {ECO:0000313|EMBL:EEF52860.1}
TAIRAT1G205802.00E-69Small nuclear ribonucleoprotein family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000258399999410341+
Transcript Sequence

Network for GWHGAAEX009718

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module11

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01423.21LSM11743.00E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11088SNRPD3, SMD3 Spliceosome map03040
Mitophagy - yeastmap04139

Gene Ontology

GO term OntologyName
GO:0000387Biological Processspliceosomal snRNP assembly
GO:0005681Cellular Componentspliceosomal complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms172.740
SRR2545915Juvenile tuber168.480
SRP108465SRR5643513five period of Gastrodia elata180.550
SRR5643514five period of Gastrodia elata213.900
SRR5643515five period of Gastrodia elata192.360
SRR5643524five period of Gastrodia elata205.290
SRR5643525five period of Gastrodia elata180.640
SRR5643528five period of Gastrodia elata135.660
SRR5643658five period of Gastrodia elata119.100
SRR5643659five period of Gastrodia elata245.260
SRR5643660five period of Gastrodia elata279.110
SRR5643661five period of Gastrodia elata274.910
SRR5643662five period of Gastrodia elata255.940
SRR5643663five period of Gastrodia elata235.480
SRR5643664five period of Gastrodia elata283.260
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1238.990
SRR6049655Rhizomagastrodiae_C368-T10_good_156.220
SRR6049656Rhizomagastrodiae_C368-T07_good_1267.300
SRR6049657Rhizomagastrodiae_C368-T07_good_1231.980
SRR6049658Rhizomagastrodiae_C368-T04_good_1288.080
SRR6049659Rhizomagastrodiae_C368-T04_good_1258.020
SRR6049660Rhizomagastrodiae_C368-T01_good_1268.060
SRR6049661Rhizomagastrodiae_C368-T04_good_1273.470
SRR6049662Rhizomagastrodiae_C368-T01_good_1320.400
SRR6049663Rhizomagastrodiae_C368-T01_good_1339.610
SRR6049664Rhizomagastrodiae_C368-T10_good_1246.930
SRR6049665Rhizomagastrodiae_C368-T10_good_1246.930
SRP279888GastroGastrodia elata tuber 709.39
JuvenJuvenile tuber382.23
Mother_GastroMother tuber of Gastrodia elata 272.40
Mother_JuvenMother tuber of Juvenile 220.53