Detail information of GWHGAAEX009743/evm.TU.scaffold_257.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG12792.00E-39Chromatin remodeling factor subunit and related transcription factors
nrgi|719996775|ref|XP_010254884.1|1.40E-88PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Nelumbo nucifera]
Swissprottr|Q8VY05|SWI3D_ARATH2.00E-68SWI/SNF complex subunit SWI3D
trEMBLtr|M0TL14|M0TL14_MUSAM1.00E-88Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P26780_001}
TAIRAT4G344302.00E-39DNA-binding family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000272205083208231+
Transcript Sequence

Network for GWHGAAEX009743

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.30Myb_DNA-binding13541.40E-10
PF16495.4SWIRM-assoc_14124905.30E-24
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
K11649SMARCC Thermogenesis map04714

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms24.610
SRR2545915Juvenile tuber19.500
SRP108465SRR5643513five period of Gastrodia elata17.070
SRR5643514five period of Gastrodia elata19.270
SRR5643515five period of Gastrodia elata17.410
SRR5643524five period of Gastrodia elata19.700
SRR5643525five period of Gastrodia elata20.110
SRR5643528five period of Gastrodia elata19.560
SRR5643658five period of Gastrodia elata25.820
SRR5643659five period of Gastrodia elata14.700
SRR5643660five period of Gastrodia elata16.720
SRR5643661five period of Gastrodia elata12.930
SRR5643662five period of Gastrodia elata17.370
SRR5643663five period of Gastrodia elata16.500
SRR5643664five period of Gastrodia elata19.140
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.760
SRR6049655Rhizomagastrodiae_C368-T10_good_125.880
SRR6049656Rhizomagastrodiae_C368-T07_good_119.630
SRR6049657Rhizomagastrodiae_C368-T07_good_127.500
SRR6049658Rhizomagastrodiae_C368-T04_good_133.500
SRR6049659Rhizomagastrodiae_C368-T04_good_141.850
SRR6049660Rhizomagastrodiae_C368-T01_good_126.310
SRR6049661Rhizomagastrodiae_C368-T04_good_128.590
SRR6049662Rhizomagastrodiae_C368-T01_good_119.600
SRR6049663Rhizomagastrodiae_C368-T01_good_122.810
SRR6049664Rhizomagastrodiae_C368-T10_good_118.440
SRR6049665Rhizomagastrodiae_C368-T10_good_118.440
SRP279888GastroGastrodia elata tuber 20.74
JuvenJuvenile tuber31.82
Mother_GastroMother tuber of Gastrodia elata 25.93
Mother_JuvenMother tuber of Juvenile 24.60