Gene detail

Detail information of GWHGAAEX009744/evm.TU.scaffold_257.21

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|194336180\|ref\|YP_002017974.1\|	5.00E-22	serine/threonine protein kinase [Pelodictyon phaeoclathratiforme BU-1]
KOG	KOG1187	0	Serine/threonine protein kinase
nr	gi\|672124543\|ref\|XP_008785658.1\|	0	PREDICTED: proline-rich receptor-like protein kinase PERK4 [Phoenix dactylifera]
Swissprot	tr\|Q9ZNQ8\|PERK4_ARATH	0	Proline-rich receptor-like protein kinase PERK4
trEMBL	tr\|M0TDM3\|M0TDM3_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P00830_001}
TAIR	AT2G18470	0	roline-rich extensin-like receptor kinase 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000272	209833	213678	+

Transcript Sequence
>GWHTAAEX009744 AAGATAGCTGAAAGGAGGAGAGACCCTAACGGCAGGGCTTGAGTACCCACAGGAGCAGTTTCTGTCAGAGAGGAGCTTCTGCACACTGAAATATAGATTTCAGGAAGGAATGGCTTCTTCCCCTGAGACTGCTCCACCAACAGAGGCGAACTCCTCCTCTTTAAATGGCTCCCACCCATTTTCACCACCACCAATTGCAGCTACCAACTCAGCACCACCCCCTTCATCATCACCCACACAAACCTCTTCTTCCTCAGCTCCCTCAGCGCCCTTCAAAAATTCATCTTCTCCCCCAAAACACCCTGCAAATGCCTCTTCGGTTCCTGCGCCGCCGGTAGACCAAAAAAATGGCGACTCGAGGAAATCTTCTGGTTCTGGCTATCATTTCAAACTGCCTGTAGACGATATTTTGGGCATTGTGTTTTTTGTTGTTCTAATTATCTCTGTAGCATTCGTTTATTGTTTGAAGAAAAATAAGAAGAAGAAGAAGGATGCTGCTCCTCATAATTCAATGAGCTATTACTCAGATTCAGGAAGTGAAAAATGGGATAATAGAGGATCAGCATGTCCGAACAAGATGATGGGGCATCCTCAAGCGATGGCTTGGCATGCTCCTCCTCCTCCGCCTTCATTGCACAGCACGGAACTGAGCATGGATTACTCAGGCCCCCATGGCCCTGCCTTGCCGCCCCCCTCCCCTGCAATTGCCCTCGGCTTCATTAAGAGCACATTCAGCTACGAGCAATTGGCATCAGCAACAAATGGCTTCTCACCCGAAAATCTACTAGGGCAGGGTGGCTTTGGCTACGTTTACAAGGGAGTGCTCCCCAATGGGAAAGAGATAGCTGTGAAGCAGCTGAAGGCGGGCAGCGGACAGGGTGAGAGGGAGTTCCAAGCAGAGGTCGATATTATCAGCAGAGTTCACCATCGTCATTTGGTCTCCCTTGTTGGCTACTGCATTTCCGGCTCTCAGCGCTTGCTAGTCTACGACTTTGTTCCAAACAAGACTCTGGAGTTCCATCTCCATGGAAACAACCGACTCACAATGGACTGGCCCACCAGAATGAAAATAGCTTTGGGATCAGCTAGAGGCCTGGCGTACCTGCACGAAGATTGCCATCCCCGTATTATTCATCGAGACATAAAAACTTCAAACATTCTTTTGGATAATAATTTCGAAGCCATGGTCAGTGATTTCTCTGTTTTGGCTGCTCGCTTGCTCTGTTCAATGCCTAAACTTGCTTGTCTCCAGGTCGCAGACTTTGGGCTCGCCAAGCTATCTTCGGACAACTACACCCATGTCTCGACTCGTGTTATGGGCACATTCGGCTACCTGGCTCCTGAGTATGCGTCGAGCGGCAAGCTCACAGAGAAATCTGATGTTTTCTCATTCGGTGTGATGCTCCTGGAACTGATAACTGGTAAGAGGCCGGTCGACAGCAATCCAATGGATGATAGCCTGGTTGATTGGGCAAGGCCTTTGCTAACTCTGCCGATGACTGAGGAGAGCCATGACGAGCTCGTCGATTCGAGGCTGGAAGGAAATTTCAGCAAGGTGGAGATGGCGCGGATGGTAGCATGCGCTGCTGCTAGCATTCGTCACTCTGCAAAAAGGCGCCCAAAGATGAGCCAGATTGTTAGAGCTTTGGAAGGCGATTCGTCGCTGGATGATTTGAACGAGGGGCTGAAGCCCGGGCAAAGCATGCTCTTTACTTCGAGCTCAGACTATGACTCAGGATCCTACGCTTTTAACATGAGAAGGATTGCTTTTGAGGGAAATGACTTCAATTTCAGCGGGCAGACCAGCGAATATGGCCTCAACCCTTCTGCCTCGAGCAGCTCAGGGGAGATGATGGATGCCTCTTCCCGCTCTCGAAGAGTCGGGCGAAGGCACTGACTGCACTGAAACTTTTTATTGGAAACAAATAAAAAATCTGTATTATGGTTAAGATTTTGATTGAAATGGGCGGATTTTGTGTTCTTGTCTGCGTATGTTTATAAGCAACTATAATAAGAGAAAGACTCTGAAACAATCTATCTTGATCTCAGTGCACTATGCCGTGTTATTGTCTGTAGAAAGCTTTGAACTTTCAGCATTTTCTGGACTAATCATGTAGGAAGAAAGGTTATTGC

Network for GWHGAAEX009744

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	223	449	3.10E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.040
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	0.000
	SRR5643514	five period of Gastrodia elata	0.080
	SRR5643515	five period of Gastrodia elata	0.030
	SRR5643524	five period of Gastrodia elata	0.060
	SRR5643525	five period of Gastrodia elata	0.070
	SRR5643528	five period of Gastrodia elata	0.070
	SRR5643658	five period of Gastrodia elata	0.110
	SRR5643659	five period of Gastrodia elata	0.090
	SRR5643660	five period of Gastrodia elata	0.030
	SRR5643661	five period of Gastrodia elata	0.070
	SRR5643662	five period of Gastrodia elata	0.160
	SRR5643663	five period of Gastrodia elata	0.120
	SRR5643664	five period of Gastrodia elata	0.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.050
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.000
SRP279888	Gastro	Gastrodia elata tuber	0.16
	Juven	Juvenile tuber	0.12
	Mother_Gastro	Mother tuber of Gastrodia elata	0.30
	Mother_Juven	Mother tuber of Juvenile	0.28