Gene detail

Detail information of GWHGAAEX009745/evm.TU.scaffold_257.22

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|332980995\|ref\|YP_004462436.1\|	7.00E-86	SNF2-like protein [Mahella australiensis 50-1 BON]
KOG	KOG0385	0	Chromatin remodeling complex WSTF-ISWI, small subunit
nr	gi\|672133463\|ref\|XP_008790354.1\|	0	PREDICTED: ATP-dependent DNA helicase DDM1 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9XFH4\|DDM1_ARATH	0	ATP-dependent DNA helicase DDM1
trEMBL	tr\|M0SHX5\|M0SHX5_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P26090_001}
TAIR	AT5G66750	0	chromatin remodeling 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000272	215219	225689	+

Transcript Sequence
>GWHTAAEX009745 CCACCATTTTCCTGCTCTTCATCTTCCTCCCATCGGCTTAGGGTTTTCTTCCGAGAACCTTGGGCCGACGCCAACCTTTTTTTATTTTTATTTTGTCCGCTTCAACTGAGCTGCCTCCTCCAACGTTGCCACCTAAATCCTTAAATCCGTCTCAATTGGATTTATCAAATTCTGGATTTACAAGAACTTGCAAGGATTTGCGGCGGGATTTAGGACCTGTTAGTTCTTACAGTGAATCTGTGAAATGGAGGCGAAGAAAGAGAACGGAGTCAAGGAAGATGAACCAGCTGCTTCCCCAGTATCGGTTCTCGAAGAAGAGGGTAACAATAATGAAGACAACGGAAAGATGAGCGAGGACGATACTCTACTGCCGCTTGAACTTGAAGCAAAAAATGGCGATACTTCTCTTATCTCAAAAACCATGGAGGAAGAGGAGCACAAATTGCTGGAGGAACGGATGAGGGAGGATGAGAAAACTAAGATAGAAAATCAAGTGTTACCAAGCTTTCAAGTAAAGTTTAGTAAGCTGGATGAGCTTCTCACACAGACGCAGTTGTATTCAGAGTTTCTTTTGGAGAAGATGGAGGACATAACTTTTAACGGCTTTGAAAATCACTCAGAAGAGGGTTTCTCTAAAGGGAAGAACAGCAGTCGTGGAAGAAAGAGGAAAGCAACAGGCCAGTATAATACAAGGAAAGCCAAAACTGCTGTTGCGGCCATGTTAAAAAGATCTAATGAATCTATTGCACCTGAAGATACCGACCTTACAGAGGAAGAAAGGGTTGAAAAAGAACAGCGACAACTCATTCCTTTAATGACTGGTGGAATATTAAAAAGTTATCAGGTTAAAGGTGTAAAGTGGTTGATATCATTGTGGCAAAATGGTCTCAATGGGATCCTTGCTGATCAGATGGGTCTTGGCAAAACAATTCAAACCATTGGATTTATTGCACATCTCAAGGGTAATGGTCTAAATGGTCCATATATTGTTATAGCTCCTCTTTCAACGTTATCAAATTGGGCAAATGAAGTATCCAGGTTTGTTCCATCTATGGGAGCCATCATATACCATGGTTCAAAAGCTGATCGTACTGAATTAAGGAGAAAGTTTATGCCAAGGGAAATAGGCCCTAATTTTCCTATTGTTATCACTTCTTATGAGGTTATCTTGCGTGATGCAAAATTTTTAGCGCATTATACTTGGAAATATGTCGTTGTAGATGAGGGTCATCGGCTAAAGAATATGAATTGCTTGCTATTAAAGGAATTGCGACGTTTGCCAATTGAAAACAAGCTTCTTTTAACTGGAACACCGCTCCAGAACAATTTGGCTGAGCTTTGGTCATTGTTAAATTTTATTTTACCAGACATTTTTTCTTCTCATCAAGAATTTGAATCCTGGTTTGACTTTTCCGGAAGATACAATACCGAGGGAGAAAGTGAAGTAAGTGAAGAAAAGAGAAGGGTTCAGGTTGTTTCAAAGCTACATTCAATCTTGCGCCCATTTCTTCTTCGGCGAATGAAGGAAGATGTTGAGCATATGCTTCCAAGGAAGAAAGAGATAATCCTCTATGCTAATATGACTGAACATCAGAAGAATATTCAGAGCCACTTGCTTAATCGAACACTAGAAAATTATTTAACTGAGATTGTAGCTAATGGAGTTTTGAGGCCTGGGATGAAGGGAAAGTTGAATAACCTGCTAATGCAGCTTAGAAAAAACTGCAATCATCCTGATATTGTACAATCTCGATATGATGAATCATTTTTCTATCCACCCGTTGACGTACTAGTTGAGCAGTGTGGCAAATTTAAACTACTAGAAAGACTGTTGGCGTTGCTACTTCCGCAAAAACATAAAGTTTTAATTTTCTCTCAGTTTACTAGAGTTGTGGATCTACTTGAATATTATATGAATGAAAAAGGCTTAGAGGTTTGCCGGATTGATGGTGGAGTTAAATTGGATGAAAGAAAGAAGCAGATAGACGAATTTAACAGGCTGGACAGCAACGTTAGCATATTCCTTCTCAGCACCAGAGCTGGCGGTTTGGGGATAAATCTCACCGCTGCTGATACATGCATAATATATGACAGCGATTGGAATCCTCAGATGGATCTGCAGGCTATGGACCGATGCCACCGGATCGGGCAGACCCGTCCCGTCCACGTGTACCGGCTGGCCACTTCGCATTCCGTCGAGGGCAAAATAATAAAAAAAGCGTTTGGGAAGCTGAAGCTGGAGCACGTGGTGATCGGGAAGGGGCACTTCCAGCAGGAGAGGTCGACCACGAACGCGCTGGACGAGTCGGAGCTGATCGCGCTGCTTCGCAACGAGGAGGATCCAGAGGATAAGCTATACCAGACGGACATCAGCGACGAAGATCTGTTCAAGCTGATGGACCGCAGCGATCTCGTTCAATCGAACGGCCCCAATCGCTCCCTCCCACTCCCCTTGAAAGGCCCCGGTTGGGAGGTTGTCGTCTCTACCAAGAGCGCCGGCACCTTGCTTTCGGCTCTCAGCAGCTGATTTCCGGCTAAATTTTTTCCAGGGTTTAGGGTTTTTGCTGTGGCCGGTCATTTATAACGGCTGATTCAATGCAATAGCAATCTTCTTAGTTCTTCTTCCTTGATTTTTGTCTGAACTCTGCCTTTGTTATTATTAGCTATTAGGAAGAAGCAAGTCATGATATTACATGCTCATTACAGAAGAAGTTGCAGCAGTTTTGTAAAAATGAAAAAAGAAACCCTTGAATTGAGCAGCTTTTGTTGTGTACTGCAATCATGAACTTTGGAAATATATTGCATTTTTTATCT

Network for GWHGAAEX009745

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.22	SNF2_N	154	500	2.40E-65
PF00271.30	Helicase_C	526	635	6.20E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.900
SRP064423	SRR2545915	Juvenile tuber	10.840
SRP108465	SRR5643513	five period of Gastrodia elata	22.860
	SRR5643514	five period of Gastrodia elata	20.340
	SRR5643515	five period of Gastrodia elata	11.640
	SRR5643524	five period of Gastrodia elata	16.610
	SRR5643525	five period of Gastrodia elata	1.340
	SRR5643528	five period of Gastrodia elata	1.250
	SRR5643658	five period of Gastrodia elata	1.430
	SRR5643659	five period of Gastrodia elata	15.810
	SRR5643660	five period of Gastrodia elata	14.170
	SRR5643661	five period of Gastrodia elata	15.240
	SRR5643662	five period of Gastrodia elata	7.430
	SRR5643663	five period of Gastrodia elata	9.600
	SRR5643664	five period of Gastrodia elata	5.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.220
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	9.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	40.800
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.010
SRP279888	Gastro	Gastrodia elata tuber	9.15
	Juven	Juvenile tuber	31.03
	Mother_Gastro	Mother tuber of Gastrodia elata	4.12
	Mother_Juven	Mother tuber of Juvenile	9.56