Detail information of GWHGAAEX009746/evm.TU.scaffold_257.23


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|268316907|ref|YP_003290626.1|5.00E-53DNA polymerase I [Rhodothermus marinus DSM 4252]
nrgi|743837047|ref|XP_010936279.1|0PREDICTED: uncharacterized protein LOC105055941 isoform X1 [Elaeis guineensis]
trEMBLtr|Q10PN8|Q10PN8_ORYSJ05'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed {ECO:0000313|EMBL:ABF94755.1}
TAIRAT3G520503.00E-925'-3' exonuclease family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000272249052289947+
Transcript Sequence

Network for GWHGAAEX009746

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02739.155_3_exonuc_N752673.40E-40
PF01367.195_3_exonuc2703667.40E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.960
SRR2545915Juvenile tuber22.480
SRP108465SRR5643513five period of Gastrodia elata12.490
SRR5643514five period of Gastrodia elata11.500
SRR5643515five period of Gastrodia elata10.720
SRR5643524five period of Gastrodia elata11.300
SRR5643525five period of Gastrodia elata8.470
SRR5643528five period of Gastrodia elata8.560
SRR5643658five period of Gastrodia elata8.830
SRR5643659five period of Gastrodia elata9.850
SRR5643660five period of Gastrodia elata10.210
SRR5643661five period of Gastrodia elata8.340
SRR5643662five period of Gastrodia elata9.640
SRR5643663five period of Gastrodia elata9.190
SRR5643664five period of Gastrodia elata9.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.800
SRR6049655Rhizomagastrodiae_C368-T10_good_115.270
SRR6049656Rhizomagastrodiae_C368-T07_good_112.930
SRR6049657Rhizomagastrodiae_C368-T07_good_115.730
SRR6049658Rhizomagastrodiae_C368-T04_good_115.100
SRR6049659Rhizomagastrodiae_C368-T04_good_115.600
SRR6049660Rhizomagastrodiae_C368-T01_good_115.370
SRR6049661Rhizomagastrodiae_C368-T04_good_115.470
SRR6049662Rhizomagastrodiae_C368-T01_good_110.680
SRR6049663Rhizomagastrodiae_C368-T01_good_111.420
SRR6049664Rhizomagastrodiae_C368-T10_good_111.760
SRR6049665Rhizomagastrodiae_C368-T10_good_111.760
SRP279888GastroGastrodia elata tuber 15.56
JuvenJuvenile tuber18.16
Mother_GastroMother tuber of Gastrodia elata 16.86
Mother_JuvenMother tuber of Juvenile 17.98