Gene detail

Detail information of GWHGAAEX009751/evm.TU.scaffold_257.28

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|343085920\|ref\|YP_004775215.1\|	1.00E-30	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
nr	gi\|743836972\|ref\|XP_010936262.1\|	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250 [Elaeis guineensis]
Swissprot	tr\|C0LGK4\|Y2165_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (Precursor)
trEMBL	tr\|A0A067ECY5\|A0A067ECY5_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO49077.1}
TAIR	AT2G16250	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000272	315589	319012	-

Transcript Sequence
>GWHTAAEX009751 TCACCACAAAGGGGACAGTTGGGAACCTTATTATTCTCATTAATACAAACCTTTCAAAACCGCCGCTCTCCTGCCTGCGTCCTGCTCCGCCGCAAGAACCCGAGAAGGGCGAAGGCGAACTGGGTTACTATCTGCTGCCACAGAAATCACTCGATTTCAAAATTCCTGAAGCATAATTTAACAAAAAAGGTGACCACCGGCAATGCCGGAAGTCCGGCGACACCGGCGGCGCTGAGTCCAGCCACCGTCTTCTTCACGCCATGTCATGATGGCAACCCTCCTATTCTGCCGCTTTCCCTTCCTCTTATTATTGCTCATGCCCTTTTTCCTGACCTTCGCCTGGGGTCAAAACCTCAGCTCAGCGGCGGATCTCGCGGCCCTCTTCCGTCTCCGCGGTTCGCTGGGTTTACGCGCGCGCGACTGGCCTCGTAGGGAGGACCCCTGCTCATCGTGGGCTGGCGTCGGCTGTGACGGCGCCGGGAGGGTCGTTTCGCTCAACCTTTACGGGCTCCGGCGAACGCGGCTTGGCCGCCTGAACCCTCGATTCGAGGTTGAAGGGATCCAGAACCTGACGCGGCTGATTTCCTTCAACGCCACTGGGTTCTCTCTCCCCGGCCCCATTCCCGACTGGTTCGGACGCCGTCTCCCCCCATTGATCGCCGTTATCGACCTTCGAAGCGCCTCCGTTTCCGGGAACATACCTTTTATTCTTGCGGAAGGCCTTACCGTACTTTCTCTTGCTGAGAACTCCATCACCGGTAACCTCCCCCCAACAATTAATCAATTGAGGAATCTTTCAGTCCTCGACCTCTCTCGAAACGTGCTATCCGGTAATATCCCAGTCGAGATCATCGCTCTCAGCAGGCTTTCGTATCTTGATTTGTCCTCCAACTTCCTCACCGGTACTGTGCCGCCGGAGATGGGAGCTTTGCAGGAGTTAAAAACTCTTATTATCGCCAATAACAGCCTCACTGGCTCCATTCCACAGCAGGTGGGCAATCTCTCTTCTCTCGTCTCTCTCGATCTCAGTTTCAATTTGTTGTTCGGGGAATTGCCTGATGCATTGAACAAGCTCAGGAGCTTGCGGAGTCTAAACTTGGGAAGCAACTTCTTCAGTGGCTCTTTAGAGGCGAGCATATTCTCCAATATAACGCAGATTGATTCAATCACGTTGAGCCGGAACAACTTCTCCGGTGAGCTCCCGGATTCATTTTGGTCTTTAACGAAGTTACGGTTCCTTGACGTCTCTTACAACAACTTCACGAGAAGTCTTCCAAATCTCTCAGCTGTCAAAGCTGATGGCTCCAGCAACGGCGGTTCATATAATCTATCGCATAATCGTTTGTATGGTTCGATCCCTTCTGGTTTTGCAGTCCTGCTTTCTGCGTTTAATAATGTGGACCTATCAAATAACTACTTGCAAGGTTCAGTGCCGTTCAATAACATCAGCAGTAATTTATCTGTTGAATCGAATTGCTTTCAGAATGCTTCGAGTCAAAGGAGTCTGGTTGATTGTCAGGAGTTTTACAGAGAGAGAGGAATACCCTTTGGCTCTGGGGATTCAATTTCACCTCCTAGTTCAAGCCCCAGTCCGTCCAAGAACACCTGGAAGTATATTGTTGCAGCAGTTGCTGGAGGAATGGCCCTTCTGGTGTTTTTAGTAATTTGTCTGTTGCTGTGCTTTAGGTGGCGCAGAAGCAGTTCATCTAATCAGAGGGAGATAAGCCCCAATGCGGCTCCATCTGTCACTGAAGGAGGAAAAGAGCCACTTCCTGCGGTAGCAGTCAACTTGCCAGACGTGGGAGAGGTTTTCACATTTCTCCAATTAGCACGCGCTACATCCGATTTTAGTGAGGGAAACCTAATTAAACATGGGAAATCCGGAGATATTTATCAGGGAGTTTTGGAGAATGGTAGTCGTGTGGCAGTGAAGAGGGTGGATATGAGCAGTGTCAAGATGGAAGCCTATCAGGTGGAATTGGAGTTTTTTGCCAAATCTTCTTCTCATGTGAGATTTGTTCCTTTTGTGGGACATTGCTTGGAGAACGAGAGTGAGAAATTCCTTGTTTACAGAGAAATGCTTCATCGTGACTTAGCTAATGCATTTTATAGAAAGTCTGCAGAGGAAGAGGAGGGATTACAATCATTGGATTGGATTACTAGATTGAAGATTGCAACAGGTGTGGCAGAGGGTCTTTGTTATTTGCATCATGAGTGTGTGCCACCATTGGTTCATAGGGATATTGAAGCTGGCAGCATCCTGCTGGATGACAAATTCGAAGTGCGGCTCGGGAGCTTGAGCAGCGTCTGCGTAGAGGAAGATGATGCGCAGGGGGGGAAGAATGTGATATCTCGGCTTCTGGGGTTGGGGTCGGGGTTGGAAAGAAGCAGAGAGGCGACGTGGTCGTACGACGTGTATTGCTTGGGAAAGGTGCTGCTGGAGCTGGTGATGGGCAGGGTGGGGCTGAGCGGCGATTGGCTGGAGCGGGCGTTGGGCTGCATCAGCCTGAGCGAGAGGGAGGGGATGGCCAAGATCCTGGACCCCTCCCTGATTGTGGACGAGGACCTCATAGAGGAGGTGTGGGCTATGGCCATCGTTGCCAAATCCTGCCTCAATCCGAGCCCCTCCAAACGCCCGCTCGCCCGCCACATCCTCGCCGCCCTCCAGAATCCTCTTAAGGTCGTTCGCCGCGACAACCCCGCCAGACTCAGGCCCTCCTCTTCTTCCGCAACTCTCTGGAACTTCGGAAGCTGGCGCCGCAGCTCCTCCGACCCTCCCTCCTTTTCCGCCCCCCATGACGACGCCTCCCTCTCCCGCCGCCGCCCTTCCAAGGATATCTTCCCGGACCCGCCGCCCCCCTCCCATCTTTGA

Network for GWHGAAEX009751

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.11	LRRNT_2	33	69	0.00012
PF13855.5	LRR_8	152	209	4.20E-07
PF13855.5	LRR_8	224	281	6.40E-07
PF13855.5	LRR_8	286	332	2.00E-06
PF00069.24	Pkinase	532	798	1.70E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XIV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0005515	Molecular Function	protein binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.280
SRP064423	SRR2545915	Juvenile tuber	1.720
SRP108465	SRR5643513	five period of Gastrodia elata	6.130
	SRR5643514	five period of Gastrodia elata	3.070
	SRR5643515	five period of Gastrodia elata	4.730
	SRR5643524	five period of Gastrodia elata	4.310
	SRR5643525	five period of Gastrodia elata	3.670
	SRR5643528	five period of Gastrodia elata	4.450
	SRR5643658	five period of Gastrodia elata	2.510
	SRR5643659	five period of Gastrodia elata	2.600
	SRR5643660	five period of Gastrodia elata	1.910
	SRR5643661	five period of Gastrodia elata	2.110
	SRR5643662	five period of Gastrodia elata	4.220
	SRR5643663	five period of Gastrodia elata	3.970
	SRR5643664	five period of Gastrodia elata	4.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.570
SRP279888	Gastro	Gastrodia elata tuber	3.90
	Juven	Juvenile tuber	3.11
	Mother_Gastro	Mother tuber of Gastrodia elata	9.09
	Mother_Juven	Mother tuber of Juvenile	7.10