Detail information of GWHGAAEX009755/evm.TU.scaffold_257.34
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 5.00E-59 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|695018939|ref|XP_009396449.1| | 0 | PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O49545|BAME1_ARATH | 0 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 (Precursor) |
| trEMBL | tr|A0A068U299|A0A068U299_COFCA | 0 | Coffea canephora |
| TAIR | AT5G65700 | 0 | Leucine-rich receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000272 | 382142 | 385999 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009755
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 36 | 70 | 6.90E-11 |
| PF13855.5 | LRR_8 | 121 | 179 | 3.80E-07 |
| PF13855.5 | LRR_8 | 287 | 326 | 1.40E-06 |
| PF00069.24 | Pkinase | 699 | 971 | 1.50E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.630 |
| SRR2545915 | Juvenile tuber | 27.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 60.300 |
| SRR5643514 | five period of Gastrodia elata | 55.690 | |
| SRR5643515 | five period of Gastrodia elata | 47.420 | |
| SRR5643524 | five period of Gastrodia elata | 48.560 | |
| SRR5643525 | five period of Gastrodia elata | 29.900 | |
| SRR5643528 | five period of Gastrodia elata | 20.670 | |
| SRR5643658 | five period of Gastrodia elata | 26.050 | |
| SRR5643659 | five period of Gastrodia elata | 35.720 | |
| SRR5643660 | five period of Gastrodia elata | 24.560 | |
| SRR5643661 | five period of Gastrodia elata | 27.910 | |
| SRR5643662 | five period of Gastrodia elata | 21.130 | |
| SRR5643663 | five period of Gastrodia elata | 19.910 | |
| SRR5643664 | five period of Gastrodia elata | 22.690 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 74.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 80.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 70.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 71.230 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 44.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 65.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 52.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 63.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 55.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 58.190 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 58.190 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.99 |
| Juven | Juvenile tuber | 73.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.72 | |
| Mother_Juven | Mother tuber of Juvenile | 21.49 |