Detail information of GWHGAAEX009759/evm.TU.scaffold_257.42


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG32685.00E-54Predicted E3 ubiquitin ligase
nrgi|672124639|ref|XP_008785711.1|7.08E-118PREDICTED: E3 ubiquitin-protein ligase FANCL [Phoenix dactylifera]
trEMBLtr|M0SWV5|M0SWV5_MUSAM4.00E-110Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P08760_001}
TAIRHS89223605.00E-54Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000272501747555300-
Transcript Sequence

Network for GWHGAAEX009759

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09765.8WD-371944.50E-47
PF11793.7FANCL_C2122932.50E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10606FANCL, PHF9 Ubiquitin mediated proteolysis map04120
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms45.870
SRR2545915Juvenile tuber23.450
SRP108465SRR5643513five period of Gastrodia elata32.310
SRR5643514five period of Gastrodia elata24.560
SRR5643515five period of Gastrodia elata22.090
SRR5643524five period of Gastrodia elata22.970
SRR5643525five period of Gastrodia elata31.290
SRR5643528five period of Gastrodia elata21.230
SRR5643658five period of Gastrodia elata21.150
SRR5643659five period of Gastrodia elata9.760
SRR5643660five period of Gastrodia elata8.430
SRR5643661five period of Gastrodia elata7.450
SRR5643662five period of Gastrodia elata9.770
SRR5643663five period of Gastrodia elata10.450
SRR5643664five period of Gastrodia elata9.390
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_159.130
SRR6049655Rhizomagastrodiae_C368-T10_good_130.640
SRR6049656Rhizomagastrodiae_C368-T07_good_148.010
SRR6049657Rhizomagastrodiae_C368-T07_good_175.730
SRR6049658Rhizomagastrodiae_C368-T04_good_1140.340
SRR6049659Rhizomagastrodiae_C368-T04_good_1160.040
SRR6049660Rhizomagastrodiae_C368-T01_good_177.570
SRR6049661Rhizomagastrodiae_C368-T04_good_1106.450
SRR6049662Rhizomagastrodiae_C368-T01_good_150.230
SRR6049663Rhizomagastrodiae_C368-T01_good_187.510
SRR6049664Rhizomagastrodiae_C368-T10_good_141.820
SRR6049665Rhizomagastrodiae_C368-T10_good_141.820
SRP279888GastroGastrodia elata tuber 26.08
JuvenJuvenile tuber12.56
Mother_GastroMother tuber of Gastrodia elata 50.32
Mother_JuvenMother tuber of Juvenile 29.34