Detail information of GWHGAAEX009760/evm.TU.scaffold_257.44
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0483 | 2.00E-38 | Transcription factor HEX, contains HOX and HALZ domains |
| nr | gi|697117463|ref|XP_009612669.1| | 3.94E-39 | PREDICTED: homeobox-leucine zipper protein HAT22-like [Nicotiana tomentosiformis] |
| Swissprot | tr|Q8GRL4|HOX19_ORYSJ | 4.00E-38 | Homeobox-leucine zipper protein HOX19 |
| trEMBL | tr|W1PKC3|W1PKC3_AMBTC | 5.00E-39 | Uncharacterized protein {ECO:0000313|EMBL:ERN10452.1} |
| TAIR | AT5G06710 | 2.00E-38 | homeobox from Arabidopsis thaliana |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000272 | 665722 | 667493 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009760
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module14 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00046.28 | Homeobox | 90 | 145 | 9.60E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-other |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 130.470 |
| SRR2545915 | Juvenile tuber | 36.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 71.930 |
| SRR5643514 | five period of Gastrodia elata | 24.060 | |
| SRR5643515 | five period of Gastrodia elata | 19.280 | |
| SRR5643524 | five period of Gastrodia elata | 26.800 | |
| SRR5643525 | five period of Gastrodia elata | 2.150 | |
| SRR5643528 | five period of Gastrodia elata | 1.110 | |
| SRR5643658 | five period of Gastrodia elata | 0.300 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.060 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 1.560 | |
| SRR5643663 | five period of Gastrodia elata | 0.350 | |
| SRR5643664 | five period of Gastrodia elata | 0.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 44.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.98 |
| Juven | Juvenile tuber | 0.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 112.85 | |
| Mother_Juven | Mother tuber of Juvenile | 14.15 |