Detail information of GWHGAAEX009786/evm.TU.scaffold_258.28
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|430742668|ref|YP_007201797.1| | 3.00E-18 | dinucleotide-utilizing protein [Singulisphaera acidiphila DSM 18658] |
| KOG | KOG2015 | 2.00E-135 | NEDD8-activating complex, catalytic component UBA3 |
| nr | gi|672146465|ref|XP_008797042.1| | 6.25E-172 | PREDICTED: NEDD8-activating enzyme E1 catalytic subunit isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|O65041|UBA3_ARATH | 6.00E-138 | NEDD8-activating enzyme E1 catalytic subunit |
| trEMBL | tr|M0TSI7|M0TSI7_MUSAM | 2.00E-164 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P21840_001} |
| TAIR | AT5G19180 | 2.00E-135 | E1 C-terminal related 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000259 | 294629 | 346050 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009786
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00899.20 | ThiF | 41 | 322 | 1.60E-54 |
| PF08825.9 | E2_bind | 335 | 390 | 1.10E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | ThiF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10686 | UBE1C, UBA3 | Ubiquitin mediated proteolysis | map04120 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045116 | Biological Process | protein neddylation |
| GO:0019781 | Molecular Function | NEDD8 activating enzyme activity |
| GO:0008641 | Molecular Function | small protein activating enzyme activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.960 |
| SRR2545915 | Juvenile tuber | 16.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.640 |
| SRR5643514 | five period of Gastrodia elata | 17.500 | |
| SRR5643515 | five period of Gastrodia elata | 15.020 | |
| SRR5643524 | five period of Gastrodia elata | 18.500 | |
| SRR5643525 | five period of Gastrodia elata | 17.960 | |
| SRR5643528 | five period of Gastrodia elata | 16.910 | |
| SRR5643658 | five period of Gastrodia elata | 15.730 | |
| SRR5643659 | five period of Gastrodia elata | 16.700 | |
| SRR5643660 | five period of Gastrodia elata | 17.180 | |
| SRR5643661 | five period of Gastrodia elata | 17.890 | |
| SRR5643662 | five period of Gastrodia elata | 15.880 | |
| SRR5643663 | five period of Gastrodia elata | 16.430 | |
| SRR5643664 | five period of Gastrodia elata | 17.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.780 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.90 |
| Juven | Juvenile tuber | 23.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.88 | |
| Mother_Juven | Mother tuber of Juvenile | 20.24 |