Detail information of GWHGAAEX009787/evm.TU.scaffold_258.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2577 | 2.00E-70 | Transcription factor E2F/dimerization partner (TDP) |
| nr | gi|743779588|ref|XP_010920264.1| | 9.92E-118 | PREDICTED: transcription factor E2FB-like isoform X2 [Elaeis guineensis] |
| Swissprot | tr|Q9FV71|E2FB_ARATH | 1.00E-86 | Transcription factor E2FB |
| trEMBL | tr|M0SPV8|M0SPV8_MUSAM | 4.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P17950_001} |
| TAIR | AT2G36010 | 2.00E-70 | E2F transcription factor 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000259 | 379916 | 393315 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX009787
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02319.19 | E2F_TDP | 128 | 191 | 1.20E-23 |
| PF16421.4 | E2F_CC-MB | 207 | 306 | 5.30E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | E2F-DP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06620 | E2F3 | Cell cycle | map04110 |
| Cellular senescence | map04218 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0005667 | Cellular Component | transcription factor complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.510 |
| SRR2545915 | Juvenile tuber | 4.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.520 |
| SRR5643514 | five period of Gastrodia elata | 2.230 | |
| SRR5643515 | five period of Gastrodia elata | 1.740 | |
| SRR5643524 | five period of Gastrodia elata | 1.850 | |
| SRR5643525 | five period of Gastrodia elata | 2.000 | |
| SRR5643528 | five period of Gastrodia elata | 1.670 | |
| SRR5643658 | five period of Gastrodia elata | 1.730 | |
| SRR5643659 | five period of Gastrodia elata | 6.380 | |
| SRR5643660 | five period of Gastrodia elata | 7.570 | |
| SRR5643661 | five period of Gastrodia elata | 7.960 | |
| SRR5643662 | five period of Gastrodia elata | 6.470 | |
| SRR5643663 | five period of Gastrodia elata | 6.870 | |
| SRR5643664 | five period of Gastrodia elata | 8.910 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.230 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.410 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.550 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.59 |
| Juven | Juvenile tuber | 3.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.47 | |
| Mother_Juven | Mother tuber of Juvenile | 2.98 |